Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1378
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.23 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   1.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.8  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.6  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 38  KIEPSKSEGMKADDVEGALTKVIAPGYI 121
           KIEP+++E +      G LT V   GY+
Sbjct: 301 KIEPAEAESLSTSGSSGILTPVSPYGYV 328


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 356 HSSQFLRNIKRVKAVFDTLQLPMQLYTDI 442
           H  + LRN+     V D LQ+P     D+
Sbjct: 286 HEQRLLRNVGVHTVVLDLLQVPFDAKEDV 314


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 449 IQTINVHESHKFLHYRPSENRNLCTNVTGRILSLY 553
           IQ + +      + Y P  N NL  N TGR +  Y
Sbjct: 16  IQIVLIIVMGALMTYGPEANVNLLKNRTGRYMFTY 50


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +2

Query: 89  ALTKVIAPGYITNLDHFVSQLKKDESFTPHGK 184
           ++  V     IT  DHF S L    S   H K
Sbjct: 449 SIESVTVDKLITYFDHFESMLNNGVSIQSHAK 480


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 404 DTLQLPMQLYTDIMPIQTINVHESHKFLHYRPSENRNLCTNVTGRIL 544
           +TL L + +   I    T   +  H +LH   S N+ +     GR+L
Sbjct: 73  ETLALSISMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVL 119


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +2

Query: 89  ALTKVIAPGYITNLDHFVSQLKKDESFTPHGK 184
           ++  V     IT  DHF S L    S   H K
Sbjct: 449 SIESVTVDKLITYFDHFESMLNNGVSIQSHAK 480


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +2

Query: 89  ALTKVIAPGYITNLDHFVSQLKKDESFTPHGK 184
           ++  V     IT  DHF S L    S   H K
Sbjct: 75  SIESVTVDKLITYFDHFESMLNNGVSIQSHAK 106


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 461 NVHESHKFLHYRPSENRNLCTNVTGRILSLY 553
           N+HE  KF + R      +C N T + L+L+
Sbjct: 102 NLHEYLKFSYPRMRAPSFICENETRQGLTLH 132


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 192 MHSM*PLLMERADHLKYIIVR 254
           +H   PLL  R D L Y I+R
Sbjct: 543 IHPWLPLLRNRLDTLIYPIIR 563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,138
Number of Sequences: 438
Number of extensions: 3040
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)