Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1378
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56740.1 68418.m07081 histone acetyltransferase family protei...    38   0.005
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative...    29   1.7  
At1g71720.1 68414.m08290 S1 RNA-binding domain-containing protei...    29   1.7  
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si...    27   6.7  
At4g23600.2 68417.m03400 coronatine-responsive tyrosine aminotra...    27   8.8  
At4g23600.1 68417.m03399 coronatine-responsive tyrosine aminotra...    27   8.8  
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu...    27   8.8  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    27   8.8  

>At5g56740.1 68418.m07081 histone acetyltransferase family protein
           similar to histone acetyltransferase HAT B [Zea mays]
           GI:5579441;  identical to cDNA histone acetyltransferase
           partial cds GI:21637256
          Length = 467

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +1

Query: 280 HQRLQTFLLWYVDAASFIDVDDDQWTFFTVFEKYQTSEGSXXXXXXXXXXXXXXXXXPNH 459
           + RL   +L +VD ++ IDV D  W  + + +K +  E                   P+ 
Sbjct: 183 YSRLVPLVLLFVDGSNPIDVTDPDWHLYLLIQKKEEKE-DPLYRIVGFTAIYKFYRYPDR 241

Query: 460 QRPRISQVLTLPPFR 504
            R R+SQ+L LP F+
Sbjct: 242 LRMRLSQILVLPSFQ 256


>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           [Triticum aestivum] GI:1737492; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 101

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 116 YITNLDHFVSQLKKDESFTPHGKMLHAFNVTPFDGESRSF 235
           YI NLD  VS+      F+  GK++ +     F GESR F
Sbjct: 20  YIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGF 59


>At1g71720.1 68414.m08290 S1 RNA-binding domain-containing protein
           contains Pfam domain, PF00575: S1 RNA binding domain
          Length = 487

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 71  ADDVEGALTKVIAPGYITNLDHFVSQLKKD-ESFTPHGKM 187
           AD +   LTK I P Y   LD+ +  LK D E F  +GKM
Sbjct: 179 ADMLGTMLTKEILPLYDKELDYLLCDLKYDAEEFLVNGKM 218


>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
           similarity to RNA helicase/RNAseIII CAF protein
           [Arabidopsis thaliana] GI:6102610; contains Pfam
           profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1324

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +2

Query: 62  GMKADDVEGALTKVIAPGYITNLDHFVSQLKKD-ESFTPHGKML--HAFNVTPFDG 220
           G  ADDV   L  VI P Y   L +F   L +D ++ +PH  ++    F   P  G
Sbjct: 318 GQDADDVSKRLFHVIRP-YAVRLKNFGVNLNRDIQTLSPHEVLMARDKFRQAPLPG 372


>At4g23600.2 68417.m03400 coronatine-responsive tyrosine
           aminotransferase / tyrosine transaminase similar to
           nicotianamine aminotransferase from Hordeum vulgare
           [GI:6498122, GI:6469087]; contains Pfam profile PF00155
           aminotransferase, classes I and II; identical to cDNA
           coronatine-regulated tyrosine aminotransferase
           (F9D16.70)  GI:15076852
          Length = 318

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 295 TFLLWYVDAASFIDVDDDQ 351
           TFL   +D +SF+D++DDQ
Sbjct: 235 TFLWTELDLSSFVDIEDDQ 253


>At4g23600.1 68417.m03399 coronatine-responsive tyrosine
           aminotransferase / tyrosine transaminase similar to
           nicotianamine aminotransferase from Hordeum vulgare
           [GI:6498122, GI:6469087]; contains Pfam profile PF00155
           aminotransferase, classes I and II; identical to cDNA
           coronatine-regulated tyrosine aminotransferase
           (F9D16.70)  GI:15076852
          Length = 422

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 295 TFLLWYVDAASFIDVDDDQ 351
           TFL   +D +SF+D++DDQ
Sbjct: 339 TFLWTELDLSSFVDIEDDQ 357


>At1g07350.2 68414.m00784 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 129

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 116 YITNLDHFVSQLKKDESFTPHGKMLHAFNV-TPFDGESRSF 235
           Y+T L H V++   ++ F   GK+     V  P+  ESR F
Sbjct: 48  YVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGF 88


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 116 YITNLDHFVSQLKKDESFTPHGKMLHAFNV-TPFDGESRSF 235
           Y+T L H V++   ++ F   GK+     V  P+  ESR F
Sbjct: 78  YVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGF 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,903,032
Number of Sequences: 28952
Number of extensions: 235957
Number of successful extensions: 596
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)