Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1376
         (830 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.7  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   2.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.0  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   9.1  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 182 HHLFLLCNRNK*TIFFYVQYINKKNG 259
           H+LFLL N  K  I FY + I   NG
Sbjct: 118 HNLFLLDNIVKPIIAFYYKPIKTLNG 143


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 34  VPNRFSSVIKEVANSTLDFFVCWQLPKGF 120
           +PN  +   +E+   TL  F C + P  +
Sbjct: 485 LPNSCALTTRELPGETLRLFTCMECPNNY 513


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 34  VPNRFSSVIKEVANSTLDFFVCWQLPKGF 120
           +PN  +   +E+   TL  F C + P  +
Sbjct: 492 LPNSCALTTRELPGETLRLFTCMECPNNY 520


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 693 LSRSVTMSAKLSGSISDNNSRSWPPS 616
           +SRS  + + +S +  D N+R  PPS
Sbjct: 3   MSRSFLVDSLISNTPKDMNARYLPPS 28


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 414 YHLIPIQQLNFQKAFPAFPALL*VSLQATSRQFLS 310
           Y +IP + LN      + P+L+   L+    Q LS
Sbjct: 153 YQIIPYEALNVDDHILSDPSLMDADLEFKGAQDLS 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,842
Number of Sequences: 336
Number of extensions: 4715
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)