Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1376
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353...    30   2.0  
03_06_0639 - 35227780-35227813,35227963-35228099,35228505-35229449     29   3.4  
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974...    29   4.5  
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304...    28   7.9  
07_03_1062 + 23668334-23669644,23670676-23670764,23671494-23671584     28   7.9  
02_01_0402 - 2934074-2937217                                           28   7.9  

>03_05_1071 +
           30133696-30133874,30134294-30135200,30135224-30135358,
           30135545-30136553,30136699-30136703
          Length = 744

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 375 PSENLTVVLESDGTEVDDEEYFSTLDPDTSLM 470
           PS  L ++ ESDG  V DEE F  LD +T ++
Sbjct: 656 PSSQLNLIPESDGLTVSDEE-FDGLDEETIMV 686


>03_06_0639 - 35227780-35227813,35227963-35228099,35228505-35229449
          Length = 371

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 339 DLLIKVPEKLGMPSENLTVVLESDGTEVDDEEYFSTLDPDTSLMILHGNE 488
           D+LIK P  + +P  ++  ++ESDG ++      S L PD   +  HG E
Sbjct: 80  DVLIKNPNPVPIPLVDIDYLIESDGRKL-----VSGLIPDAGTIHAHGEE 124


>01_06_1760 -
           39697079-39697162,39697280-39697340,39697415-39697479,
           39697579-39697860,39697938-39698012,39698121-39698195,
           39698343-39698399,39698653-39698726,39698912-39699055,
           39699608-39699662,39700027-39700149,39700276-39700320,
           39701068-39701160,39701249-39701662
          Length = 548

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 533 TDDIALGDKEQVASLVGRLQHNLCHISLLGGQDLELLS 646
           + DIA  D+E V  L  RL  +   +S + G DL L+S
Sbjct: 183 SQDIAFFDEETVGDLTSRLGSDCQQVSRVIGNDLNLIS 220


>09_04_0609 -
           18929600-18929646,18929753-18929924,18930304-18930498,
           18930691-18930801,18930885-18931097,18931643-18931720,
           18931894-18932001,18932175-18932316,18932413-18933761,
           18934492-18935121
          Length = 1014

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 306 KKKGIVAMSLEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEE 434
           ++ G    ++E  L+ +    G PS NL  +L + GTE ++ E
Sbjct: 61  ERSGSAPPTMEGSLVALGHLTGQPSGNLGAILPNLGTEANNSE 103


>07_03_1062 + 23668334-23669644,23670676-23670764,23671494-23671584
          Length = 496

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 246 TKKMENDINKPYKICDVNREKKKGIVAMSLEDLLIKVPEKLGMPSENLTVVLES 407
           T+  ++ +   Y++C   R K++ + A ++  L+  V E+    SE   VVL S
Sbjct: 308 TRGKKDALTTLYRLCSARRNKERAVSAGAVVPLIHLVGERGSGTSEKAMVVLAS 361


>02_01_0402 - 2934074-2937217
          Length = 1047

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 566 VASLVGRLQHNLCHISLLGGQDLELLS 646
           + +L+G ++ NL H SL GG  LEL+S
Sbjct: 100 LGNLIGLMRLNLSHNSLSGGLPLELVS 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,536,085
Number of Sequences: 37544
Number of extensions: 446362
Number of successful extensions: 1137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)