Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1376
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1467| Best HMM Match : CIDE-N (HMM E-Value=8.9e-23)                 69   6e-12
SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)                64   1e-10
SB_34699| Best HMM Match : Peptidase_S8 (HMM E-Value=1.5e-07)          31   0.87 
SB_52304| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_10879| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)                 29   6.1  
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  

>SB_1467| Best HMM Match : CIDE-N (HMM E-Value=8.9e-23)
          Length = 162

 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 35/74 (47%), Positives = 50/74 (67%)
 Frame = +3

Query: 273 KPYKICDVNREKKKGIVAMSLEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEEYFSTLD 452
           K YKI DV+R ++KG+VA SL +L  K  + L +P  +  V +E DGT+V+DE+YF TL 
Sbjct: 5   KAYKIQDVSRTRRKGVVARSLSELRSKAIKTLDLPKGS-RVCME-DGTDVEDEDYFDTLP 62

Query: 453 PDTSLMILHGNEKW 494
           P T L+I+  +E W
Sbjct: 63  PQTVLVIVRPDEDW 76


>SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)
          Length = 972

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 32/74 (43%), Positives = 44/74 (59%)
 Frame = +3

Query: 273 KPYKICDVNREKKKGIVAMSLEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEEYFSTLD 452
           +P+K+C+  R    GIVA S  ++  +  EKL + + +  V LE DGTEVDDEEYFS L 
Sbjct: 771 RPFKVCNSQRSCTIGIVAESFVEMKARGSEKLNI-ARDCRVFLEEDGTEVDDEEYFSFLP 829

Query: 453 PDTSLMILHGNEKW 494
             T LM++     W
Sbjct: 830 DQTKLMLVEPGSSW 843


>SB_34699| Best HMM Match : Peptidase_S8 (HMM E-Value=1.5e-07)
          Length = 785

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 105 ITERL*TRKIQ*FNPCQTVFLGNRDFIICFYFVIEISKQSSFTFSILTKKMEND-INKPY 281
           ++ERL T KI  F   Q + +   DF++C Y +I+I + S F   I     + D IN  Y
Sbjct: 225 VSERLTTLKIISFRTKQPIKIRRHDFVVC-YVLIDILRLSRFHVLIAAHDYKCDLINMSY 283


>SB_52304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 261 NDINKPYKICDVNREKKKGIVAMSLEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEEYF 440
           +D N    + D +     G V +  +D ++ V + +G+  +N+ VV + DG  VDD+   
Sbjct: 672 DDSNDDTVVDDDDGNDDGGAVVVDDDDGVVFVDDDVGVVDDNVGVVDDDDGVFVDDDNGV 731

Query: 441 STLDPD 458
             +D D
Sbjct: 732 VFVDVD 737


>SB_10879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1029

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -1

Query: 236 ERKRRLFTYFDYKVKTDDEIPIPKKHCLTRVELLYFSCLKPFGNCQHTKKSRVEFAT-SL 60
           +R++R+  YF  +V  D+ +PI  KH  +R+ L  F  LK  G  +  K   +   T +L
Sbjct: 257 DRRKRMGKYF-MQVCRDNGLPIQTKHLFSRLTLSEF--LK--GKIKLKKWENLNLPTDAL 311

Query: 59  ITDEKRLGTRKSKSHT 12
             D   + TR+  S T
Sbjct: 312 SLDNMCIATREESSDT 327


>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
          Length = 892

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 1   QSLVVCDFDFRVPNRFSSVIKEVANSTLDFF 93
           + L++C F +RVPN   S ++ ++N+ LD F
Sbjct: 49  KELLLCSF-YRVPNNSPSALEVLSNAILDVF 78


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 1   QSLVVCDFDFRVPNRFSSVIKEVANSTLDFF 93
           + L++C F +RVPN   S ++ ++N+ LD F
Sbjct: 301 KELLLCSF-YRVPNNSPSALEVLSNAILDVF 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,715,240
Number of Sequences: 59808
Number of extensions: 543386
Number of successful extensions: 1391
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)