Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1376
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone...    30   2.3  
U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone...    30   2.3  
U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone...    30   2.3  
U23518-5|AAO38653.1|  448|Caenorhabditis elegans Nuclear hormone...    30   2.3  
U23518-4|ABB88231.1|  450|Caenorhabditis elegans Nuclear hormone...    30   2.3  
AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear recep...    30   2.3  
AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear recep...    30   2.3  
Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical p...    29   5.4  
Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z81091-4|CAD56588.1|  287|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AL110477-6|CAB54330.1|  265|Caenorhabditis elegans Hypothetical ...    28   9.4  

>Z11505-7|CAA77581.1|  918|Caenorhabditis elegans Hypothetical
           protein F59B2.12 protein.
          Length = 918

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
 Frame = +2

Query: 491 VGPEHAKCQVSLDQTDDIALGDKEQVASLVGRL-----QHNLCHISLLGGQDLELLSDMD 655
           VGP   K   + ++TD+ AL +  Q A  +        Q +L   S+  G+  E  ++  
Sbjct: 357 VGPNGIKSHSTSNKTDNYALDEANQSAGSISEQIGKNGQRSLNESSIESGRKAESRNNTA 416

Query: 656 PDSLADIVTDRDNRIILEHIKEASGRILLE 745
            D+L  +  D +  +   H K ASG  L E
Sbjct: 417 ADTLDSV--DANGTVSSSHSKSASGTSLDE 444


>U23518-8|AAO38654.1|  400|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform b protein.
          Length = 400

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 143 QPLSNSVSWESGFHHLFLLCNRNK*T 220
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 160 EPLPNTYSFEHAFYNPHLICNRTKLT 185


>U23518-7|AAO38655.1|  440|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform c protein.
          Length = 440

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 143 QPLSNSVSWESGFHHLFLLCNRNK*T 220
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 200 EPLPNTYSFEHAFYNPHLICNRTKLT 225


>U23518-6|AAD31548.2|  446|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform d protein.
          Length = 446

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 143 QPLSNSVSWESGFHHLFLLCNRNK*T 220
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 206 EPLPNTYSFEHAFYNPHLICNRTKLT 231


>U23518-5|AAO38653.1|  448|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform a protein.
          Length = 448

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 143 QPLSNSVSWESGFHHLFLLCNRNK*T 220
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 206 EPLPNTYSFEHAFYNPHLICNRTKLT 231


>U23518-4|ABB88231.1|  450|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform e protein.
          Length = 450

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 143 QPLSNSVSWESGFHHLFLLCNRNK*T 220
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 208 EPLPNTYSFEHAFYNPHLICNRTKLT 233


>AF083234-1|AAD03692.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-21b protein.
          Length = 400

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 143 QPLSNSVSWESGFHHLFLLCNRNK*T 220
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 160 EPLPNTYSFEHAFYNPHLICNRTKLT 185


>AF083233-1|AAD03691.1|  458|Caenorhabditis elegans nuclear receptor
           NHR-21a protein.
          Length = 458

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 143 QPLSNSVSWESGFHHLFLLCNRNK*T 220
           +PL N+ S+E  F++  L+CNR K T
Sbjct: 218 EPLPNTYSFEHAFYNPHLICNRTKLT 243


>Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/79 (22%), Positives = 31/79 (39%)
 Frame = +3

Query: 189 CFYFVIEISKQSSFTFSILTKKMENDINKPYKICDVNREKKKGIVAMSLEDLLIKVPEKL 368
           C Y +I++       F  +  +  N  N         + K  G+ +   E +   + E+L
Sbjct: 212 CLY-IIQLCSTFLLVFIFIFYRRHNSENIGPVFMAAKKTKSDGVKSTKFEFVFENIAEEL 270

Query: 369 GMPSENLTVVLESDGTEVD 425
             PSEN    +   G+E D
Sbjct: 271 MFPSENELNTISDVGSECD 289


>Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/79 (22%), Positives = 31/79 (39%)
 Frame = +3

Query: 189 CFYFVIEISKQSSFTFSILTKKMENDINKPYKICDVNREKKKGIVAMSLEDLLIKVPEKL 368
           C Y +I++       F  +  +  N  N         + K  G+ +   E +   + E+L
Sbjct: 212 CLY-IIQLCSTFLLVFIFIFYRRHNSENIGPVFMAAKKTKSDGVKSTKFEFVFENIAEEL 270

Query: 369 GMPSENLTVVLESDGTEVD 425
             PSEN    +   G+E D
Sbjct: 271 MFPSENELNTISDVGSECD 289


>Z81091-4|CAD56588.1|  287|Caenorhabditis elegans Hypothetical
           protein F55H12.5 protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +3

Query: 324 AMSLEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEEYFSTLDPDTSLMILHGNEKWVPN 503
           A+ + D+L K  + LG P +   V++  DG        F  +D +   ++ HG  K    
Sbjct: 195 AIEINDMLEKSRKYLGCPLKGPLVIVCKDGAAKSGLVAF--IDTEADRLMKHGKAKHTDT 252

Query: 504 MPSVRY 521
           +  +R+
Sbjct: 253 IKQIRF 258


>AL110477-6|CAB54330.1|  265|Caenorhabditis elegans Hypothetical
           protein Y113G7B.8 protein.
          Length = 265

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 150 CQTVFLGNRDF--IICFYFVIEISKQSSFTFSILTKKMENDINKPYKICDVNREK 308
           C+T  L   DF  +I F  V E SKQ + + ++  K+++  IN+   +C V RE+
Sbjct: 16  CRTALLC-LDFPSLINFSLVSERSKQCAVSLNLEVKELDLKINRKVNVC-VEREQ 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,535,889
Number of Sequences: 27780
Number of extensions: 425701
Number of successful extensions: 1160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)