Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1376
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13460.1 68418.m01549 calmodulin-binding family protein low s...    31   0.94 
At1g70480.1 68414.m08109 expressed protein contains Pfam profile...    30   1.6  
At3g53130.1 68416.m05855 cytochrome P450 family protein similar ...    29   2.9  
At2g44060.2 68415.m05478 late embryogenesis abundant family prot...    29   5.0  
At2g44060.1 68415.m05477 late embryogenesis abundant family prot...    29   5.0  
At5g26210.1 68418.m03119 PHD finger family protein contains Pfam...    28   6.6  
At5g20510.1 68418.m02437 PHD finger family protein contains Pfam...    28   6.6  

>At5g13460.1 68418.m01549 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 443

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 217 NNLLLRSVY*QKKWKTTL-TNHIKFAMLIAKRRKELSRCRLKTYS*KCRKSWECLLK 384
           +N+L      QK+W  +L T   K A++++K+   L R R+K Y+   RKS E   K
Sbjct: 192 DNILKVDTNGQKRWDDSLLTKEEKEAVVMSKKEASLRRERIKEYAVTHRKSAESYQK 248


>At1g70480.1 68414.m08109 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 320

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 650 MDPDSLADIVTDRDNRIILEHIKEASGRILL 742
           + PD++ +IV D DNR + ++IKE   R +L
Sbjct: 111 LPPDAVYNIVIDPDNRRVFKNIKEVMSRKVL 141


>At3g53130.1 68416.m05855 cytochrome P450 family protein similar to
           Cytochrome P450 97B2 (SP:048921) [Glycine max]
          Length = 539

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +3

Query: 294 VNREKKKGIVAMSLEDLLIKVPEKLGMPSENLTVVLESDGTEVDDEEYFSTLDPDTSLMI 473
           V  EK   ++  ++EDL+ K  E           ++E +G  ++DEEY +  DP     +
Sbjct: 277 VKAEKAVTLIRETVEDLIAKCKE-----------IVEREGERINDEEYVNDADPSILRFL 325

Query: 474 LHGNEK 491
           L   E+
Sbjct: 326 LASREE 331


>At2g44060.2 68415.m05478 late embryogenesis abundant family protein
           / LEA family protein similar to ethylene-responsive late
           embryogenesis-like protein [Lycopersicon esculentum]
           GI:1684830; contains Pfam profile PF03168: Late
           embryogenesis abundant protein
          Length = 325

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 339 DLLIKVPEKLGMPSENLTVVLESDGTEVDDEEYFSTLDPDTSLMILHGNE 488
           D+L+K P  + +P  ++  ++ESDG ++      S L PD   +  HG E
Sbjct: 88  DVLVKNPNPVPIPLIDVNYLVESDGRKL-----VSGLIPDAGTLKAHGEE 132


>At2g44060.1 68415.m05477 late embryogenesis abundant family protein
           / LEA family protein similar to ethylene-responsive late
           embryogenesis-like protein [Lycopersicon esculentum]
           GI:1684830; contains Pfam profile PF03168: Late
           embryogenesis abundant protein
          Length = 325

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 339 DLLIKVPEKLGMPSENLTVVLESDGTEVDDEEYFSTLDPDTSLMILHGNE 488
           D+L+K P  + +P  ++  ++ESDG ++      S L PD   +  HG E
Sbjct: 88  DVLVKNPNPVPIPLIDVNYLVESDGRKL-----VSGLIPDAGTLKAHGEE 132


>At5g26210.1 68418.m03119 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 255

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 423 DDEEYFSTLDPDTSLMILHG--NEKWVPNMPS 512
           D +E+F   DP+   + L+G  NE W  N+P+
Sbjct: 33  DVQEFFRLCDPEKENLCLYGHPNEHWEVNLPA 64


>At5g20510.1 68418.m02437 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 260

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 423 DDEEYFSTLDPDTSLMILHG--NEKWVPNMPS 512
           D E++F   DP+   + L+G  NE W  N+P+
Sbjct: 34  DVEDFFQQCDPEKQNLCLYGFPNEVWEVNLPA 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,238,701
Number of Sequences: 28952
Number of extensions: 390948
Number of successful extensions: 1015
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)