Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1375
         (831 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.97 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.97 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.97 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.97 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.97 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.97 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.97 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    25   0.97 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.97 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   3.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   3.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   3.0  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   9.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.1  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.1  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 694 RVTPPMSMFSTASATVTSGL 635
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 694 RVTPPMSMFSTASATVTSGL 635
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 694 RVTPPMSMFSTASATVTSGL 635
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 694 RVTPPMSMFSTASATVTSGL 635
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 694 RVTPPMSMFSTASATVTSGL 635
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 694 RVTPPMSMFSTASATVTSGL 635
           R TPP+S  S ++AT +SGL
Sbjct: 80  RSTPPLSTPSNSNATKSSGL 99


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 694 RVTPPMSMFSTASATVTSGL 635
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 694 RVTPPMSMFSTASATVTSGL 635
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 694 RVTPPMSMFSTASATVTSGL 635
           R TPP+S  S ++AT +SGL
Sbjct: 124 RSTPPLSTPSNSNATKSSGL 143


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 400 ASGGTATALRNAGLTVQDVSD 462
           +S  TATA+ +A +T+Q+VS+
Sbjct: 251 SSPTTATAIASATVTIQNVSN 271


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 400 ASGGTATALRNAGLTVQDVSD 462
           +S  TATA+ +A +T+Q+VS+
Sbjct: 199 SSPTTATAIASATVTIQNVSN 219


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 400 ASGGTATALRNAGLTVQDVSD 462
           +S  TATA+ +A +T+Q+VS+
Sbjct: 382 SSPTTATAIASATVTIQNVSN 402


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 240 LSPPVTQVQVSYTVVLEQTEHG-VKWKTSSSQR 335
           L+PPVTQ Q+   + L+    G  +  T SS R
Sbjct: 198 LNPPVTQTQLPLNLGLDFPYQGKFEVPTKSSPR 230


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 682 PMSMFSTASATVTSGLDTVWTN 617
           P++  S ASA   S LD  W +
Sbjct: 359 PLTSLSLASAQTLSELDLSWNS 380


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 476 GALVMSDTS*TVRPAFRSAVAVPPLAINCRPHSDRLFANESRP 348
           G +V   TS  V  A  ++    PLA  CR +   + A  S P
Sbjct: 223 GRIVERFTSDRVHAALVTSPRARPLARTCRDNRLLVLAGTSSP 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,988
Number of Sequences: 336
Number of extensions: 3341
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)