Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1375
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    92   8e-20
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    28   1.4  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    28   1.9  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   2.5  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   4.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   4.3  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    26   5.7  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    26   5.7  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    26   7.5  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   7.5  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   10.0 
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   10.0 

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 92.3 bits (219), Expect = 8e-20
 Identities = 42/65 (64%), Positives = 52/65 (80%)
 Frame = +3

Query: 510 PAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGV 689
           PAVH GILAR   SD++D+  Q  E I +VVCNLYPF +T++KP+VT+ +AVE IDIGGV
Sbjct: 66  PAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDIGGV 125

Query: 690 TLLRA 704
           TLLRA
Sbjct: 126 TLLRA 130



 Score = 83.8 bits (198), Expect = 3e-17
 Identities = 41/62 (66%), Positives = 50/62 (80%)
 Frame = +1

Query: 322 ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 501
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA  +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 502 TL 507
           TL
Sbjct: 63  TL 64



 Score = 30.7 bits (66), Expect = 0.26
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 710 KNHDRVTVVCDPADYDAVSKK 772
           KNH RVT++ DPADY   + K
Sbjct: 133 KNHARVTILSDPADYATFTDK 153


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 183 IKTQEPLDEVKNISDYNNRLSPPVTQVQV----SYTVVLEQTEH 302
           +K     +EV +IS +N+R  PP+T   V    S++V    T H
Sbjct: 427 VKPSVSPEEVHDISQFNHRNDPPITAASVDSSNSFSVHRSSTNH 470


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 706 SARRRVTPPMSMFSTASATVTS-GLDTVWTNGYRLQTT 596
           +++  V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 150 NSKLSVRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 468 ESTGDARRSGENFTPAVHAGILARLSDSDQEDMKR 572
           + TG A  SGENFT A    IL   +D   E  ++
Sbjct: 677 QETGYAINSGENFTTAARHAILDLTNDEGIEQSRK 711


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 186 KTQEPLDEV-KNISDYNNRLSPPVTQVQVSYTVVLEQTEHGVKW 314
           K + P + V + IS +     P   QV V +T  ++++ HGV W
Sbjct: 152 KYESPGNNVFEAISPHERESFPSEPQVSVLFTSSVKRSPHGVSW 195


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +2

Query: 503  LYSSGTCWDLSSII 544
            LY++G+CW+LS II
Sbjct: 1456 LYTNGSCWELSVII 1469


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 234 NRLSPPVT-QVQVSYTVVLEQTEHGVKWKTSSSQRFRQDGS 353
           N+L   +T + +    V ++  +HG++W T   Q F +  S
Sbjct: 625 NKLKDQLTGEYKTVPNVAIDYRDHGIRWVTLGEQNFGEGSS 665


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 492 SGENFTPAVHAGILARLSDSDQEDMKRQ 575
           SG+ F P + + + A L  +D+ED++RQ
Sbjct: 241 SGKRFLPII-SNVTAELYPADEEDIRRQ 267


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 748 GRVTDDGDPVVVLGSARRRVTPPMSMFSTASATVTSGLDTVWTNGYRL 605
           G+ T  G   V +    RRV P +S+  ++  TV   +DT ++   +L
Sbjct: 461 GQSTKPGADPVSVEEELRRVIPMISLLRSSGITVPISIDTYYSKVAKL 508


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 530 DPSMYRWSKVFTRPPSISGALVMSDTS 450
           DP +++  K+F RPP   G L+    S
Sbjct: 517 DPQVFKNLKIFKRPPKKEGDLIFDRLS 543


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 150 FNFIVYILKKYIKTQEPLDEVKNISDYNNRLS 245
           F F++ +L+  +KT+  + E K  + + NRLS
Sbjct: 811 FEFLIPLLEMILKTKHKVLEEKGQAVFRNRLS 842


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 34  ISIFCLLSCEAIHCLIPIQQKKKNSSSF 117
           +S+ C  SC+      P+Q ++KNSSSF
Sbjct: 210 VSLNCSSSCKTT----PLQSREKNSSSF 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,825
Number of Sequences: 5004
Number of extensions: 56211
Number of successful extensions: 169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)