Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1375
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    67   2e-11
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451...    31   1.1  
03_01_0599 + 4416441-4416549,4416854-4417394,4417476-4417939,441...    29   3.4  
11_02_0149 - 8801675-8804332                                           29   4.5  
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437...    29   4.5  
12_01_0447 - 3530766-3530942,3531058-3531147,3531396-3531478,353...    29   6.0  
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419...    29   6.0  
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775...    29   6.0  
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    28   7.9  

>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 34/64 (53%), Positives = 42/64 (65%)
 Frame = +1

Query: 316 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGR 495
           K AL+S+SDKT L  L   L   G  +I++GGTA++L  AG+ V  V  IT  PEML GR
Sbjct: 46  KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105

Query: 496 VKTL 507
           VKTL
Sbjct: 106 VKTL 109



 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +3

Query: 510 PAVHAGILARLSDSDQ-EDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGG 686
           P+VH GILAR       + +         VVV NLYPF   V+   ++  D +ENIDIGG
Sbjct: 111 PSVHGGILARRDQEHHLKALNEHGIGTFDVVVVNLYPFYNKVTSGVISFEDGIENIDIGG 170

Query: 687 VTLLRA 704
            T++RA
Sbjct: 171 PTMIRA 176


>03_01_0614 +
           4515515-4515540,4515988-4516209,4516681-4516768,
           4517084-4517123,4517259-4517305,4517464-4517584,
           4517931-4518091
          Length = 234

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 444 SSRCVGHHESTGDARRSGENF--TPAVHAGILARLSDSDQEDMKR 572
           SS  VG H+   D  +S      +PA  AGI+ARL D   ++++R
Sbjct: 45  SSSNVGPHQRASDNSQSSSRAQPSPAEAAGIIARLKDKSVDELQR 89


>03_01_0599 +
           4416441-4416549,4416854-4417394,4417476-4417939,
           4418361-4418496,4418616-4418687,4418777-4418845,
           4418940-4419011,4419101-4419172,4419359-4419416
          Length = 530

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 25/87 (28%), Positives = 33/87 (37%)
 Frame = +3

Query: 384 WPAVDCQWRYRHGASERRPHSSRCVGHHESTGDARRSGENFTPAVHAGILARLSDSDQED 563
           W AV+    +R G S      +   G   S   ARR+    +P + A  L  L DS    
Sbjct: 134 WSAVNTTDNFRRGMSTYFEMVAEAQGKTMSVCLARRADTRSSPFISALELVSLDDSMYNT 193

Query: 564 MKRQKYEMISVVVCNLYPFVQTVSKPD 644
               KY M +V         + VS PD
Sbjct: 194 TDFDKYVMSTVARSRFGAKGEIVSYPD 220


>11_02_0149 - 8801675-8804332
          Length = 885

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 289 SKQNMASNGKLALLSVSDKTGLLSLAKSLSECGLQL 396
           S QN+ S G +ALL+ ++ T + S + S +E G QL
Sbjct: 553 SCQNVTSMGVMALLATAEPTSMPSSSTSSNETGSQL 588


>03_05_0086 -
           20642873-20643033,20643384-20643504,20643698-20643744,
           20643882-20643921,20644331-20644418,20644949-20645161,
           20645589-20645628,20646332-20646416
          Length = 264

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 438 PHSSRCVGHHESTGDARRSGENFTPAVHAGILARLSDSDQEDMKR 572
           P SS    H  ++ + +      +PA  AGI+ARL D   +D++R
Sbjct: 75  PSSSSGSPHQRASDNPQSLHGQPSPAEAAGIIARLKDKSVDDLQR 119


>12_01_0447 -
           3530766-3530942,3531058-3531147,3531396-3531478,
           3531571-3531886,3531979-3532040,3532139-3532244,
           3532346-3532412,3532495-3532608,3532706-3532784,
           3533043-3533213,3534223-3534355,3534922-3535081,
           3535179-3535330
          Length = 569

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
 Frame = +1

Query: 223 LTTITAYRPQSPKFKSVTQ*CLSKQNMASNGKLALLSVSDKTGLLSLAKS---LSECGLQ 393
           LT +      +P F ++    L   ++  +GK   + V D+ G ++       L+   +Q
Sbjct: 287 LTLVEKVMTVNPDFATLDTTILDALHIMHDGKFLHIPVLDREGQIAACLDVLQLTHAAIQ 346

Query: 394 LIASGGTATALRNAGLTVQDVSDITRAPE 480
           L+  GG  T    A   +Q   D T A E
Sbjct: 347 LVVEGGNDTVNDVANTVMQRFWDSTLALE 375


>08_01_0475 -
           4185534-4186047,4187437-4187708,4188032-4188979,
           4190096-4190387,4190486-4191357,4192298-4192354,
           4192391-4192504,4192966-4193595
          Length = 1232

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 214 RISLTTITAYRPQSPKFKSVTQ*CLSKQNMASNGK 318
           R+   +   Y PQ P FK+V   CL K++  S  K
Sbjct: 791 RVDTHSHQLYYPQRPLFKTVAADCLGKRDYTSGSK 825


>07_03_0735 +
           21075033-21075846,21077065-21077199,21077384-21077517,
           21077604-21077814,21078033-21078270,21078346-21078496,
           21078593-21078931
          Length = 673

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = -3

Query: 811 LCPKSSD-----DVCSL*FL*HSIVVGRVTDDGDPVVVLGSARRRVTPPMSMFSTASATV 647
           LCP   D     D+C L F   +I+     DDG P  ++ +  +  + P  +F  A AT+
Sbjct: 108 LCPYDKDAFIVYDLCYLAFSNRNILAAAADDDGSPRFLMNT--QNASAPAEVFDAAVATL 165


>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 674 DVLDRVRHGHVRLRYRLDE-RVQVTDHH 594
           DVL  +R GHV L Y L E      DHH
Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHH 714


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,578,061
Number of Sequences: 37544
Number of extensions: 382701
Number of successful extensions: 1315
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)