Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1375
         (831 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   5e-20
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      84   2e-16
SB_52990| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)                  29   4.6  
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_56303| Best HMM Match : Phage_Mu_Gam (HMM E-Value=4.9)              29   6.1  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      29   6.1  
SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_4431| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.1  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 45/65 (69%), Positives = 53/65 (81%)
 Frame = +3

Query: 510 PAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGV 689
           PAVH GILAR+S+ D+ DM +Q +E I VVVCNLYPFV TV+K  V V++AVE IDIGGV
Sbjct: 99  PAVHGGILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGV 158

Query: 690 TLLRA 704
           TLLRA
Sbjct: 159 TLLRA 163



 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 48/74 (64%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
 Frame = +1

Query: 292 KQNMAS--NGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDI 465
           K+ MA+   G LALLSVS+K GL+  AK L + G +L+ASGGTA A+RNAG+ V+DVS+I
Sbjct: 24  KKKMAAVGAGSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEI 83

Query: 466 TRAPEMLGGRVKTL 507
           T APEMLGGRVKTL
Sbjct: 84  TGAPEMLGGRVKTL 97



 Score = 36.7 bits (81), Expect = 0.023
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 710 KNHDRVTVVCDPADYDAV 763
           KNH+RVTVVCDP DY+ V
Sbjct: 166 KNHERVTVVCDPEDYNKV 183


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 40/59 (67%), Positives = 48/59 (81%)
 Frame = +3

Query: 528 ILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 704
           ILAR+S+ D+ DM +Q +E I VVVCNLYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 2   ILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60



 Score = 35.5 bits (78), Expect = 0.053
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +2

Query: 710 KNHDRVTVVCDPADYD 757
           KNH+RVTVVCDP DY+
Sbjct: 63  KNHERVTVVCDPEDYN 78


>SB_52990| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 782

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 270 SYTVVLEQTEHGVKWKTSSSQRFRQDGSTLVSKEPVG 380
           +YT+ LE T  G KWK  S+ +  +    +  KE +G
Sbjct: 415 AYTIALESTSVGAKWKLKSTPQDSERFVQMAMKELLG 451


>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
          Length = 900

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 199 PWMRSRISLTTITAYRPQSPKFKSVTQ*CLSKQNM 303
           PW  ++  L TI AY+  + K K V + C +  N+
Sbjct: 682 PWPSAQQELATINAYKTPTDKLKCVQRCCFTIMNL 716


>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1194

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 463 CPTHLEL*GRRSEAPWRYRHWQSTAGHIPTGSLLTRVDPSCLK 335
           CP  + +   R+ +   Y  W+       TG+L+TR++PS +K
Sbjct: 447 CPNDITITTARNNSKAAYVTWKPPQAVDNTGNLVTRIEPSEIK 489


>SB_56303| Best HMM Match : Phage_Mu_Gam (HMM E-Value=4.9)
          Length = 308

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = +1

Query: 394 LIASGGTATALRNAGLTVQDVSDIT----RAPEMLGGRVKTLL 510
           L+ SG  +TAL N+G T+  VS  T    R+P  L G ++++L
Sbjct: 156 LVVSGALSTALENSGKTLIFVSGRTHNRSRSPRPLRGDIRSVL 198


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 600  VCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAEPRTTTGSPSSVTRPTTMLCQR 770
            +C+   +V     P V      +   I  VT     PRTT   P+S + P TM  +R
Sbjct: 1446 ICSFVKYVAQFGAPPVQPLSGPQRASISRVT-----PRTTPDKPTSSSTPVTMETER 1497


>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 546 DSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVT 692
           +SD+ED + + YE+I          ++ +   D+     ++ I IGG T
Sbjct: 5   ESDKEDSQEEPYEIIETPGARQQDLLRDLMSMDLGNRTTIQQIGIGGAT 53


>SB_4431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/85 (20%), Positives = 33/85 (38%)
 Frame = +3

Query: 207 EVKNISDYNNRLSPPVTQVQVSYTVVLEQTEHGVKWKTSSSQRFRQDGSTLVSKEPVGMW 386
           +++      ++L   V  ++     +L   +  ++W  S    + +D S+     P G  
Sbjct: 8   QIEQTKQLGHKLDAKVLDIRDVDVFILSFRDFSLQWPRS----WNKDPSSCCLHGPTGYG 63

Query: 387 PAVDCQWRYRHGASERRPHSSRCVG 461
           P   C W+Y  G   +      CVG
Sbjct: 64  PE-RCHWKYYRGRGGQHRDGKLCVG 87


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 186  KTQEPLDEVKNISDYNNRLSPPVTQVQVSYTVVLEQTEHGVKWKTSSSQRFRQDGSTLVS 365
            K Q+  D VK + D     +  + Q +     + E  EH +    +  Q+  Q+ S LVS
Sbjct: 1682 KAQDDADSVKRLVDAIIEENDTLKQSEHDLLAIQEDLEHTIDELVAEKQKLIQENSALVS 1741


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,503,418
Number of Sequences: 59808
Number of extensions: 438572
Number of successful extensions: 1271
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)