Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1375
         (831 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       25   2.1  
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       25   2.1  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    25   3.7  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    25   3.7  
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       25   3.7  
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    24   4.9  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    24   6.5  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   6.5  

>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 446 TVRPAFRSAVAVPPLAINCRPHSDRLFANESRPVLSETLRRASFPFDAMFC 294
           TVR + RS   VPP          R+F+NE   +  E     +F  +AM C
Sbjct: 159 TVRRSSRSTKGVPPQRFRETTGMVRIFSNERILITQEYCEPRTFE-EAMSC 208


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 446 TVRPAFRSAVAVPPLAINCRPHSDRLFANESRPVLSETLRRASFPFDAMFC 294
           TVR + RS   VPP          R+F+NE   +  E     +F  +AM C
Sbjct: 165 TVRRSSRSTKGVPPQRFRETTGMVRIFSNERILITQEYCEPRTFE-EAMSC 214


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = +2

Query: 398 LPVAVPPRRFGTPASQ-----FKMCRTSREHRRCSEVG*KLYS-SGTCWDLSSI 541
           L V +PP      A+Q      K CR +++  RCSE+   +++  G C   +++
Sbjct: 163 LSVRLPPEDGAECATQPCSALLKACRYAKQPERCSEIFQSIFTDEGLCCTFNTL 216


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -2

Query: 446 TVRPAFRSAVAVPPLAINCRPHSDRLFANESRPVLSETLRRASFPFDAMFC 294
           TVR + RS   VPP          R+F NE   +  E     +F  +AM C
Sbjct: 389 TVRRSSRSTKGVPPQRFRETTGMVRIFLNERILITQEYCEPRTFE-EAMSC 438


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -2

Query: 446 TVRPAFRSAVAVPPLAINCRPHSDRLFANESRPVLSETLRRASFPFDAMFC 294
           TVR + RS   VPP          R+F NE   +  E     +F  +AM C
Sbjct: 159 TVRRSSRSTKGVPPQRFRETTGMVRIFLNERILITQEYCEPRTFE-EAMSC 208


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = +2

Query: 398 LPVAVPPRRFGTPASQ-----FKMCRTSREHRRCSEVG*KLYS-SGTCWDLSSI 541
           L V +PP      A+Q      K CR +++  RCSE+   +++  G C   +++
Sbjct: 163 LSVRLPPEDGAGCATQPCSALLKACRYAKQPERCSEIFQSIFTDEGLCCTFNTL 216


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 195 EPLDEVKNISDYNNRLSPP 251
           EP ++  + S  NNRL+PP
Sbjct: 579 EPKEQTTSSSPSNNRLTPP 597


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 446 TVRPAFRSAVAVPPLAINCRPHSDRLFANESRPVLSETLRRA 321
           T RPA+    A+  L   CR    R  A+ + P +S   R+A
Sbjct: 290 TGRPAYWCTPAIEELENECRIAEQRQLASPTDPDISALDRQA 331


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 743,241
Number of Sequences: 2352
Number of extensions: 13991
Number of successful extensions: 35
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 87651612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)