Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1375
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   2.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.0  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 352 LLSLAKSLSECGLQLIASGGTATALRNA 435
           LLS  +S+SEC L   +S  +  + RN+
Sbjct: 166 LLSKRRSVSECSLGTASSTSSTASSRNS 193


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 462 HHESTGDARRSGENFTPAVHAGIL 533
           HH  T   R SG   T  + AG+L
Sbjct: 539 HHRDTPVVRASGRELTIILLAGVL 562


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 462 HHESTGDARRSGENFTPAVHAGIL 533
           HH  T   R SG   T  + AG+L
Sbjct: 629 HHRDTPVVRASGRELTIILLAGVL 652


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +3

Query: 168 ILKKYIKTQEPLDEVKNISDYNNRLSPPVTQVQVSYTVVLEQTEH 302
           I + ++KT + + E++       +L  P T  +V+Y +  +  E+
Sbjct: 274 ICEAFVKTGKKISELEKEMLNGQKLQGPFTAEEVNYMLKAKNMEN 318


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 386 PHSDRLFANESRPVLSETLRRASFPFDAMFCLLK 285
           P+ D L+   +    S T+    FPFD   C++K
Sbjct: 135 PNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIMK 168


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/37 (21%), Positives = 19/37 (51%)
 Frame = +3

Query: 108 FFVQLLMLKTL*DIFNFIVYILKKYIKTQEPLDEVKN 218
           F++ + +  +   IFN +   + +YI   +P+   K+
Sbjct: 261 FYIAMDVTCSTSSIFNLVAISIDRYIAVTQPIKYAKH 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,765
Number of Sequences: 438
Number of extensions: 3775
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)