Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1375
         (831 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    72   4e-13
At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containi...    30   1.6  
At3g46620.1 68416.m05061 zinc finger (C3HC4-type RING finger) fa...    28   6.6  
At1g64410.1 68414.m07301 hypothetical protein                          28   6.6  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    28   6.6  
At3g42320.1 68416.m04373 hypothetical protein various predicted ...    28   8.7  
At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden...    28   8.7  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
 Frame = +1

Query: 295 QNMASNG-KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITR 471
           Q+  S+G K AL+S+SDK  L SL   L E G  ++++GGTA+ L NAG++V  V  +T 
Sbjct: 64  QSSGSSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTH 123

Query: 472 APEMLGGRVKTL 507
            PEML GRVKTL
Sbjct: 124 FPEMLDGRVKTL 135



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = +3

Query: 510 PAVHAGILARLS-DSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPD-VTVADAVENIDIG 683
           P +H GILAR   +   E +         VVV NLYPF + V+ P  ++  D +ENIDIG
Sbjct: 137 PNIHGGILARRDVEHHMEALNEHGIGTFDVVVVNLYPFYEKVTAPGGISFEDGIENIDIG 196

Query: 684 GVTLLRA 704
           G  ++RA
Sbjct: 197 GPAMIRA 203


>At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 1038

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 428  GTPASQF--KMCRTSREHRRCSEVG*KLYSSGTCWDLSSIIRL*PGRHETSEVRDDKR 595
            GTP+     K+C TSR H    E+   +  +G C DLS+ + L     E+S+  + ++
Sbjct: 878  GTPSYNMMVKICATSRLHHEVDELLQAMERNGRCTDLSTYLTLIQVYAESSQFAEAEK 935


>At3g46620.1 68416.m05061 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 395

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = -3

Query: 673 MFSTASATVTSGLDTVWTNGYRLQTTTLIISYF*----RFMSSWSESDNRAKI--PACTA 512
           M ++ SAT+T   ++  T      TTTL  SY+     RF+S W + D  A +  P C  
Sbjct: 2   MPNSRSATITPTTESTTTT--TTTTTTLTTSYWCYSCTRFISVWEDQDANAGVLCPYCNG 59

Query: 511 G 509
           G
Sbjct: 60  G 60


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 710 KNHDRVTVVCDPADYDAVSKK 772
           K HDRVTV  +P D D   K+
Sbjct: 582 KGHDRVTVTVEPNDQDTAKKE 602


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 710 KNHDRVTVVCDPADYDAVSKK 772
           K HDRVTV  +P D D   K+
Sbjct: 208 KGHDRVTVTVEPNDQDTAKKE 228


>At3g42320.1 68416.m04373 hypothetical protein various predicted
           Helicases, Arabidopsis thaliana
          Length = 541

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 710 KNHDRVTVVCDPADYDAVSKKSKRTN 787
           K HDRVTV  +P + D   K+    N
Sbjct: 342 KEHDRVTVTIEPNNQDTTKKEKDELN 367


>At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3)
           identical to RSH3 (RelA/SpoT homolog) GI:7141308 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01966:
           HD domain, PF04607: Region found in RelA / SpoT proteins
          Length = 712

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 282 VLEQTEHGVKWKTSSSQRFRQDGSTLVSKEPVGMWP--AVDCQWRYRHGASERRP 440
           VL+  E      T   +   +DGS++ S EP+  +P  A DC + Y+   ++  P
Sbjct: 545 VLQMVEWARWVVTWHFETMSKDGSSICSSEPLCSFPSHAEDCPFSYKPSGNQEGP 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,623,326
Number of Sequences: 28952
Number of extensions: 299579
Number of successful extensions: 947
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)