Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1374X
(352 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q1L6Q3 Cluster: Rh-like protein; n=3; Obtectomera|Rep: ... 36 0.25
UniRef50_Q2J7N2 Cluster: Benzoate membrane transport protein; n=... 32 2.4
UniRef50_Q1MHD9 Cluster: Putative uncharacterized protein; n=1; ... 32 3.1
UniRef50_Q110E8 Cluster: Amino acid adenylation domain; n=1; Tri... 32 3.1
UniRef50_Q6H4B1 Cluster: Putative uncharacterized protein OSJNBa... 32 3.1
UniRef50_Q70TB3 Cluster: Male-specific doublesex protein; n=31; ... 32 3.1
UniRef50_Q4QJC5 Cluster: Putative uncharacterized protein; n=2; ... 32 3.1
UniRef50_UPI0000D578A7 Cluster: PREDICTED: similar to CG7996-PA,... 31 4.1
UniRef50_Q3SS65 Cluster: Putative uncharacterized protein; n=2; ... 31 4.1
UniRef50_A1G6A4 Cluster: LigA; n=1; Salinispora arenicola CNS205... 31 4.1
UniRef50_A4H4B3 Cluster: Putative uncharacterized protein; n=1; ... 31 4.1
UniRef50_UPI000155D31E Cluster: PREDICTED: hypothetical protein;... 31 5.4
UniRef50_UPI000023EC93 Cluster: hypothetical protein FG04069.1; ... 31 5.4
UniRef50_A3JDF5 Cluster: ADP-ribose pyrophosphatase; n=1; Marino... 31 5.4
UniRef50_Q0DTV9 Cluster: Os03g0221600 protein; n=1; Oryza sativa... 31 5.4
UniRef50_UPI0001555DB5 Cluster: PREDICTED: hypothetical protein,... 31 7.2
UniRef50_UPI0000EBEBD8 Cluster: PREDICTED: hypothetical protein;... 31 7.2
UniRef50_Q0M3M5 Cluster: Putative uncharacterized protein; n=1; ... 31 7.2
UniRef50_A1FUE2 Cluster: Putative uncharacterized protein; n=1; ... 31 7.2
UniRef50_A0LPI5 Cluster: Putative uncharacterized protein; n=1; ... 31 7.2
UniRef50_Q60EZ6 Cluster: Putative uncharacterized protein OJ1111... 31 7.2
UniRef50_A4RV93 Cluster: Predicted protein; n=2; Ostreococcus|Re... 31 7.2
UniRef50_O68562 Cluster: Outer membrane lipoprotein omlA precurs... 31 7.2
UniRef50_UPI00015B5EDD Cluster: PREDICTED: hypothetical protein;... 30 9.5
UniRef50_UPI0000E7F880 Cluster: PREDICTED: hypothetical protein;... 30 9.5
UniRef50_UPI0000E202CB Cluster: PREDICTED: hypothetical protein;... 30 9.5
UniRef50_UPI00006D0DCF Cluster: hypothetical protein TTHERM_0021... 30 9.5
UniRef50_Q3W933 Cluster: DEAD/DEAH box helicase:Helicase, C-term... 30 9.5
UniRef50_Q0S0Q9 Cluster: Possible metal-dependent hydrolase; n=2... 30 9.5
UniRef50_P24328 Cluster: Pertactin precursor (P.95) [Contains: O... 30 9.5
>UniRef50_Q1L6Q3 Cluster: Rh-like protein; n=3; Obtectomera|Rep:
Rh-like protein - Bombyx mori (Silk moth)
Length = 443
Score = 35.5 bits (78), Expect = 0.25
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = -3
Query: 59 SAVYRVPTRQAGSGPAGYP 3
SAVY VPTRQAGSG A YP
Sbjct: 18 SAVYHVPTRQAGSGLAEYP 36
>UniRef50_Q2J7N2 Cluster: Benzoate membrane transport protein; n=2;
Bacteria|Rep: Benzoate membrane transport protein -
Frankia sp. (strain CcI3)
Length = 516
Score = 32.3 bits (70), Expect = 2.4
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = -1
Query: 352 RRNGRGRTLPPSRRSAAAVEPGVGGERLSSSGPMRRQSPP 233
RR+G GR RR A G GG R S GP R P
Sbjct: 135 RRHGAGRVREHGRRGAGRAAGGRGGPRAGSLGPACRHRHP 174
>UniRef50_Q1MHD9 Cluster: Putative uncharacterized protein; n=1;
Rhizobium leguminosarum bv. viciae 3841|Rep: Putative
uncharacterized protein - Rhizobium leguminosarum bv.
viciae (strain 3841)
Length = 1825
Score = 31.9 bits (69), Expect = 3.1
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 35 GSERDTPPTGLLFHSMF-GDDSDDENADRI 121
G + PPT FH ++ GDD DDEN D +
Sbjct: 1316 GDTKQLPPTNF-FHKIYAGDDEDDENPDAV 1344
>UniRef50_Q110E8 Cluster: Amino acid adenylation domain; n=1;
Trichodesmium erythraeum IMS101|Rep: Amino acid
adenylation domain - Trichodesmium erythraeum (strain
IMS101)
Length = 1331
Score = 31.9 bits (69), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 222 TGRPKGAETAPHATVTLARWHQEDGTTRRRLRT 124
TG+PKG + A V L W QE+ T + +T
Sbjct: 619 TGKPKGVAMSQRALVNLIMWQQEEATVGQGAKT 651
>UniRef50_Q6H4B1 Cluster: Putative uncharacterized protein
OSJNBa0030K05.13; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OSJNBa0030K05.13 - Oryza sativa subsp. japonica (Rice)
Length = 227
Score = 31.9 bits (69), Expect = 3.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 352 RRNGRGRTLPPSRRSAAAVEPGVGGERLSSSGPMRRQSPP 233
RR+ PP RR+AAA P V G ++ P+ R +PP
Sbjct: 179 RRSSAASGGPPRRRTAAAPPPPVEGRLVAELPPLFRVAPP 218
>UniRef50_Q70TB3 Cluster: Male-specific doublesex protein; n=31;
Tephritidae|Rep: Male-specific doublesex protein -
Bactrocera oleae (Olive fruit fly)
Length = 400
Score = 31.9 bits (69), Expect = 3.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 306 PPQSSRGSEESVCPAPAL*GGSLLPVMVTGR 214
P QS GS ++ P+P+ G++LP+ V GR
Sbjct: 202 PAQSLEGSSDTSSPSPSSTSGAVLPISVVGR 232
>UniRef50_Q4QJC5 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1356
Score = 31.9 bits (69), Expect = 3.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 334 RTLPPSRRSAAAVEPGVGGERLSSSGPMRRQSPP 233
R LP RRSA PG+ G ++ P R PP
Sbjct: 274 RPLPTRRRSAGTTTPGISGLPVAQPQPQRAAPPP 307
>UniRef50_UPI0000D578A7 Cluster: PREDICTED: similar to CG7996-PA,
partial; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to CG7996-PA, partial - Tribolium castaneum
Length = 277
Score = 31.5 bits (68), Expect = 4.1
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 188 CGAVSAPLGRPVTITGRRLPPHRA--GAGQTLSSDPRLDCGGT 310
CG VS PL T + PH A G G+T S DCGGT
Sbjct: 29 CGIVSVPLIIGGTAATEKEFPHMAVIGYGETADSQLGWDCGGT 71
>UniRef50_Q3SS65 Cluster: Putative uncharacterized protein; n=2;
Nitrobacter winogradskyi Nb-255|Rep: Putative
uncharacterized protein - Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391)
Length = 671
Score = 31.5 bits (68), Expect = 4.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 170 ARVTVACGAVSAPLGRPVTITGRRLPPHRAGAGQTLSSDP 289
ARV V G AP PV++T ++ P +AG+G + DP
Sbjct: 364 ARVVVTGGTTEAPKVNPVSLTDFKV-PGKAGSGAAATRDP 402
>UniRef50_A1G6A4 Cluster: LigA; n=1; Salinispora arenicola
CNS205|Rep: LigA - Salinispora arenicola CNS205
Length = 600
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -1
Query: 352 RRNGRGRTLPPSRRSAAAVEPGVGGERLSSSGPMRRQSPP 233
R GR R +PP RR+ A PG R +GP R PP
Sbjct: 315 RDRGRRRRVPPGRRTCRAGRPG----RAPRAGPRRGVDPP 350
>UniRef50_A4H4B3 Cluster: Putative uncharacterized protein; n=1;
Leishmania braziliensis|Rep: Putative uncharacterized
protein - Leishmania braziliensis
Length = 2872
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 343 GRGRTLPPSRRSAAAVEPGV-GGERLSSSGP 254
GRG T + R+AAAVE GV GG L GP
Sbjct: 1721 GRGHTFGSAPRAAAAVESGVGGGGALDGPGP 1751
>UniRef50_UPI000155D31E Cluster: PREDICTED: hypothetical protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein - Ornithorhynchus anatinus
Length = 290
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 188 CGAVSAPLGRPVTITGRRLPPHRAGAGQTLSSDPRLDCG 304
C A SAP R +I LPP RA T S++ + DCG
Sbjct: 158 CCASSAPYHRATSIPSCLLPPQRAREPGTDSTELQEDCG 196
>UniRef50_UPI000023EC93 Cluster: hypothetical protein FG04069.1; n=1;
Gibberella zeae PH-1|Rep: hypothetical protein FG04069.1
- Gibberella zeae PH-1
Length = 1186
Score = 31.1 bits (67), Expect = 5.4
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 5 DTPLGQNQPAGSERDTPPTGLLFHSMFGDDSDDENA 112
DTPL +QP G G L S DD DDE A
Sbjct: 936 DTPLTPSQPIGRPAPIGRPGSLSQSRASDDQDDETA 971
>UniRef50_A3JDF5 Cluster: ADP-ribose pyrophosphatase; n=1;
Marinobacter sp. ELB17|Rep: ADP-ribose pyrophosphatase -
Marinobacter sp. ELB17
Length = 242
Score = 31.1 bits (67), Expect = 5.4
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = -2
Query: 231 VMVTGRPKGAETAPHATVTLARWHQ---EDGTTRRRLRTAM-RXXXXXXXXSPNILWKSN 64
VM+ R KG E+ +A V W Q + G + L A+ R PN L K
Sbjct: 21 VMLQERQKGPESGRYALVGGLVWEQPASDGGDSDETLGNAVTRILKGKVGFLPNHLEKLP 80
Query: 63 PVGGVSRSDPAGW 25
P G V+R GW
Sbjct: 81 PEGSVTRDASLGW 93
>UniRef50_Q0DTV9 Cluster: Os03g0221600 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os03g0221600 protein -
Oryza sativa subsp. japonica (Rice)
Length = 480
Score = 31.1 bits (67), Expect = 5.4
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Frame = +2
Query: 191 GAVSAPLG-----RPVTITGRRLPPHRAGAG---QTLSSDPRLDCGG 307
GA+ P G PV++T R+PPH A G L PRL+ GG
Sbjct: 135 GAIREPHGVRQRQEPVSVTLERVPPHAASGGVLQPPLLRRPRLEAGG 181
>UniRef50_UPI0001555DB5 Cluster: PREDICTED: hypothetical protein,
partial; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein, partial - Ornithorhynchus anatinus
Length = 295
Score = 30.7 bits (66), Expect = 7.2
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 352 RRNGRGRTLPPSRRSAAAVEPGVGGERLSSSGPMRRQSPP 233
RRNG+GR L P R A A +P G + ++ GP + PP
Sbjct: 110 RRNGQGRRLGPG-RGAQAAQPEEEGTQ-AAGGPCQPTRPP 147
>UniRef50_UPI0000EBEBD8 Cluster: PREDICTED: hypothetical protein;
n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
Bos taurus
Length = 299
Score = 30.7 bits (66), Expect = 7.2
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -1
Query: 349 RNGRGRTLPPSR-RSAAAVEPGV-GGERLSSSGPMRRQSPP 233
R GR R P R R PG+ RL+SSGP Q PP
Sbjct: 121 REGRARGSGPGRPRRCPPAPPGLLAAPRLASSGPQSGQGPP 161
>UniRef50_Q0M3M5 Cluster: Putative uncharacterized protein; n=1;
Caulobacter sp. K31|Rep: Putative uncharacterized
protein - Caulobacter sp. K31
Length = 89
Score = 30.7 bits (66), Expect = 7.2
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = -2
Query: 198 TAPHATVTLARWHQEDGTTRRRLRTAMRXXXXXXXXSPNILWKSNPVGGVSRSDPAGWFW 19
T P ATVT A+ E RRR++ MR ++ VGGV+ GW
Sbjct: 18 TPPAATVTPAQARHERAKVRRRVQGTMRRWLWAVLAFLMLV-----VGGVAACQAPGWLG 72
Query: 18 PS 13
PS
Sbjct: 73 PS 74
>UniRef50_A1FUE2 Cluster: Putative uncharacterized protein; n=1;
Stenotrophomonas maltophilia R551-3|Rep: Putative
uncharacterized protein - Stenotrophomonas maltophilia
R551-3
Length = 588
Score = 30.7 bits (66), Expect = 7.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 312 AVPPQSSRGSEESVCPAPAL*GGSLLPVMVTGRPKGAETAP 190
A P SS G+ + PAPA G + T RP + T P
Sbjct: 366 AAAPSSSSGNAPAATPAPAANGNATQASSSTARPAASSTTP 406
>UniRef50_A0LPI5 Cluster: Putative uncharacterized protein; n=1;
Syntrophobacter fumaroxidans MPOB|Rep: Putative
uncharacterized protein - Syntrophobacter fumaroxidans
(strain DSM 10017 / MPOB)
Length = 214
Score = 30.7 bits (66), Expect = 7.2
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -2
Query: 312 AVPPQSSRGSEESVCPAPAL*GGSLLPVMVTGRPKGAETAPHATVTLARWHQEDGTTR 139
AVPPQ P + GG ++P P+GAE A HA T+A + GT R
Sbjct: 129 AVPPQPRPARPPQPGHPPEMPGGRMMPAQPP-MPEGAEGAGHA--TMAAPGADSGTVR 183
>UniRef50_Q60EZ6 Cluster: Putative uncharacterized protein
OJ1111_A10.16; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1111_A10.16 - Oryza sativa subsp. japonica (Rice)
Length = 197
Score = 30.7 bits (66), Expect = 7.2
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -1
Query: 352 RRNGRGRTLPPSRRSAAAVEPGVGGERLSSSGPMRRQS 239
RR R LPP R+A A GE GPMR +S
Sbjct: 83 RRRHRPSPLPPGARAATAASGRRPGEVRGGEGPMREES 120
>UniRef50_A4RV93 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 833
Score = 30.7 bits (66), Expect = 7.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 5 DTPLGQNQPAGSERDTPPTGLLFHSMFGDDSDDENADRIA 124
D P + PA ++ + G+L G D DENAD A
Sbjct: 644 DIPTSTSSPARAKEEGAGIGMLMGMFMGSDEKDENADDAA 683
>UniRef50_O68562 Cluster: Outer membrane lipoprotein omlA precursor;
n=24; Gammaproteobacteria|Rep: Outer membrane
lipoprotein omlA precursor - Pseudomonas aeruginosa
Length = 176
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 258 PELDKRSPPTPGSTAAALRRXGGRVLPLP 344
PE K PP PGST L+R P+P
Sbjct: 136 PEAQKEEPPKPGSTLEQLQREVDEAQPVP 164
>UniRef50_UPI00015B5EDD Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 3820
Score = 30.3 bits (65), Expect = 9.5
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 337 GRTLPPSRRSAAAVEPGVGGERLSSSG 257
GR+LP +AA ++PGV G SSSG
Sbjct: 819 GRSLPRDYEAAARLQPGVVGSTRSSSG 845
>UniRef50_UPI0000E7F880 Cluster: PREDICTED: hypothetical protein;
n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 269
Score = 30.3 bits (65), Expect = 9.5
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 352 RRNGRGRTLPPSRRSAAAVEPGVGGER--LSSSGPMRRQSPP 233
+R GR LPP RR A PG GG SS+ P Q PP
Sbjct: 99 QRRSSGRCLPPRRR--AGPSPGSGGAAPPQSSTPPYPLQDPP 138
>UniRef50_UPI0000E202CB Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 339
Score = 30.3 bits (65), Expect = 9.5
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = +3
Query: 240 DCLLIGPELDKRSPPTPGSTAAALRRXGGRVLPLPF 347
DC L G R PP PG TA A GR PF
Sbjct: 270 DCRLQGGRRQGRPPPDPGPTAGAALAVCGRQCRRPF 305
>UniRef50_UPI00006D0DCF Cluster: hypothetical protein TTHERM_00218390;
n=1; Tetrahymena thermophila SB210|Rep: hypothetical
protein TTHERM_00218390 - Tetrahymena thermophila SB210
Length = 5965
Score = 30.3 bits (65), Expect = 9.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 5 DTPLGQNQPAGSER--DTPPTGLLFHSMFGDDSDDENAD 115
D+ GQNQ +ER D P L+ + G D DDE+ D
Sbjct: 3144 DSMFGQNQDGNNERNRDDEPDHLIMGRINGADDDDEDDD 3182
>UniRef50_Q3W933 Cluster: DEAD/DEAH box helicase:Helicase,
C-terminal:Type III restriction enzyme, res subunit;
n=1; Frankia sp. EAN1pec|Rep: DEAD/DEAH box
helicase:Helicase, C-terminal:Type III restriction
enzyme, res subunit - Frankia sp. EAN1pec
Length = 1230
Score = 30.3 bits (65), Expect = 9.5
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -1
Query: 352 RRNGRGRTLPP--SRRSAAAVEPGVGGERLSSSG 257
RRN RGR PP R SA+AVEP G S+SG
Sbjct: 5 RRNPRGRAEPPVSGRHSASAVEP--SGPTPSASG 36
>UniRef50_Q0S0Q9 Cluster: Possible metal-dependent hydrolase; n=2;
Nocardiaceae|Rep: Possible metal-dependent hydrolase -
Rhodococcus sp. (strain RHA1)
Length = 310
Score = 30.3 bits (65), Expect = 9.5
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 261 PAL*GGSLLPVMVTG-RPKGAETAPHATVTLARWHQEDGTTRRRLRTAM 118
PAL + PVM+ R GAE H V + DG+ RR+RTA+
Sbjct: 171 PALEKAGMHPVMLDMVRWHGAEEVEHRNVAFDAYMYVDGSYARRVRTAL 219
>UniRef50_P24328 Cluster: Pertactin precursor (P.95) [Contains:
Outer membrane protein P.70]; n=374; Bordetella|Rep:
Pertactin precursor (P.95) [Contains: Outer membrane
protein P.70] - Bordetella parapertussis
Length = 922
Score = 30.3 bits (65), Expect = 9.5
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 170 ARVTVACGAVSAPLGRPVTITG--RRLPPHRAGAGQTLSSDPR 292
ARVTV+ G++SAP G + G RR PP + TL + R
Sbjct: 322 ARVTVSGGSLSAPHGNVIETGGGARRFPPPASPLSITLQAGAR 364
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 322,625,775
Number of Sequences: 1657284
Number of extensions: 5808827
Number of successful extensions: 24842
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24819
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11088517726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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