Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1374X
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    25   3.4  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    24   6.0  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    24   6.0  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    24   7.9  

>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 215 RPVTITGRRLPPHRAGAGQTLSSDP 289
           +P  ITGRR+P   A  G TL   P
Sbjct: 370 QPSEITGRRVPHRYAQDGNTLPYTP 394


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 234 GGDCLLIGPELDKRSPPT-PGSTAAALRRXGGRV 332
           GG  L +  E  K+ PP+ PGS     R  GGRV
Sbjct: 75  GGGVLRV--EWAKQPPPSGPGSKRGGRRERGGRV 106


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 14  LGQNQPAGSERDTPPTGLLFH 76
           +G++QPA   +D PP  L  H
Sbjct: 358 IGEDQPAEEAQDGPPELLFMH 378


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 66  NPVGGVSRSDPAGWFW 19
           NP+  +S+  P GW W
Sbjct: 292 NPIASLSKIVPKGWQW 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,134,817
Number of Sequences: 5004
Number of extensions: 16696
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)