Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1374X
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0040 + 25341418-25341810 28 1.8
09_04_0041 - 14051870-14052430,14052509-14052562 28 2.4
03_05_0574 - 25744078-25744572 28 2.4
02_05_0691 - 30949234-30949243,30949613-30950001,30950425-309504... 28 2.4
11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067 27 4.1
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 27 4.1
03_02_0992 + 13049871-13050449 27 4.1
10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616... 27 5.5
06_03_0733 + 23976835-23976906,23977076-23977279,23977388-239776... 27 5.5
02_05_0125 + 26046448-26046654,26046754-26047149,26047557-26047763 27 5.5
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601... 26 7.2
08_01_0707 + 6249568-6249873,6250121-6250273,6251608-6251757 26 7.2
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 26 7.2
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 26 7.2
04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859 26 7.2
04_03_0765 + 19376949-19377156,19377637-19377833,19378259-193784... 26 7.2
07_03_0324 + 16803652-16803990,16804001-16804054,16804264-168042... 26 9.6
06_02_0112 - 11979548-11979725,11980236-11980321,11980777-119808... 26 9.6
01_06_1604 + 38567374-38567391,38567505-38567636,38569377-385694... 26 9.6
>02_05_0040 + 25341418-25341810
Length = 130
Score = 28.3 bits (60), Expect = 1.8
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -1
Query: 343 GRGRTLPPSRRSAAAVEPGVGGERLSSSGPMRRQSPPXXXXXXXXXX*DCAARYRHSSA 167
G G +P RR AA GG + SGP RR+ P A R+RH S+
Sbjct: 65 GGGAGVP--RRRRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGPQLRCG-APRWRHGSS 120
>09_04_0041 - 14051870-14052430,14052509-14052562
Length = 204
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 349 RNGRGRTLPPSRRSAAAVEPGVGGERLSSSGPMRRQSPP 233
+ GRGR P +AAA P ++S P R PP
Sbjct: 89 KRGRGRPPKPKDAAAAAAAPAPAPAAPAASSPRPRGRPP 127
>03_05_0574 - 25744078-25744572
Length = 164
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 222 TGRPKGAETAPHATVTLARWHQEDGTTRRRL 130
T P G + ++T A+W + D +TR RL
Sbjct: 16 TAPPPGRDHTQDCSLTYAQWKEVDASTRHRL 46
>02_05_0691 -
30949234-30949243,30949613-30950001,30950425-30950449,
30950594-30950688,30950842-30951359,30951652-30951736,
30951842-30952633
Length = 637
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 340 RGRTLPPSRRSAAAVEPGVGGERLSSSGPMRRQSPP 233
R +LP SR P V SSS ++QSPP
Sbjct: 307 RRNSLPASRSPPPDASPSVNKRHSSSSARNKKQSPP 342
>11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067
Length = 472
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 216 RPKGAETAPHATVTLARWHQED 151
+PKG ET H V A +H+ED
Sbjct: 443 KPKGIETYIHPAVERAHFHKED 464
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 307 AAAVEPGVGGERLSSSGPMRRQSPP 233
AAAV P + LSS+ P RR SPP
Sbjct: 15 AAAVLPPKPFKPLSSAAPFRRPSPP 39
>03_02_0992 + 13049871-13050449
Length = 192
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 349 RNGRGRTLPPSRRSAAAVEPGVGGERLSSSGPM 251
R GRG LPP R + P +G S+S P+
Sbjct: 71 RIGRGGVLPPHRHRRSVPPPSLGRGVASTSPPL 103
>10_08_0343 -
16960764-16960895,16961166-16961171,16961272-16961640,
16962118-16962304,16962567-16962759,16962864-16963137,
16963215-16963374,16963985-16964199,16964784-16964876,
16965192-16965260,16965293-16965445,16965534-16965737,
16966416-16966691,16967336-16967431,16967585-16967788,
16967877-16968069,16968229-16968374,16968771-16969425,
16971462-16971774,16971989-16972139,16972602-16973815,
16973933-16974182,16974784-16975035
Length = 1934
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 261 ELDKRSPPTPGSTAAALRRXGGRVLP 338
+LD++ P+ STA+ LR G R LP
Sbjct: 644 DLDRKHVPSLISTASVLREIGNRPLP 669
>06_03_0733 +
23976835-23976906,23977076-23977279,23977388-23977645,
23978002-23978217,23978324-23978479,23978556-23978867,
23978957-23979044,23979224-23979372,23979465-23979755
Length = 581
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 236 RRLPPHRAGAGQTLSSDPRLDCGGTA 313
RRL H+ G G+++S D R D G A
Sbjct: 533 RRLSAHQNGGGRSVSRDGRRDSGRPA 558
>02_05_0125 + 26046448-26046654,26046754-26047149,26047557-26047763
Length = 269
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/52 (26%), Positives = 16/52 (30%)
Frame = -2
Query: 306 PPQSSRGSEESVCPAPAL*GGSLLPVMVTGRPKGAETAPHATVTLARWHQED 151
PP S C A P G G+ + TL WH ED
Sbjct: 122 PPSEEENSSSFCCSADDAVPAPAAPATSHGGSSGSSSISEYLTTLPGWHVED 173
>11_01_0727 -
6010537-6010548,6011029-6011606,6011709-6011774,
6011867-6011964,6013238-6013608
Length = 374
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 331 TLPPSRRSAAAVEPGVGGERLSSSGP 254
T P S + A V PG GG GP
Sbjct: 320 TYPGSNQGAPGVNPGYGGNNRQGPGP 345
>08_01_0707 + 6249568-6249873,6250121-6250273,6251608-6251757
Length = 202
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 343 GRGRTLPPSRRSAAAVEPGVGGERLSSSGPMRRQS 239
GRGR +R AAAVE G G R + RR++
Sbjct: 19 GRGRLRRTRKREAAAVEGGSGRGRGGCTRRWRRRT 53
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 47 DTPPTGLLFHSMFGDDSDDENADRIA 124
+TP GL+FHS F + N RIA
Sbjct: 365 NTPKYGLIFHSSFIGRASTRNKGRIA 390
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 62 GLLFHSMFGDDSDDENAD 115
GL F SM G +SDDE+ D
Sbjct: 261 GLSFSSMSGSESDDESED 278
>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
Length = 429
Score = 26.2 bits (55), Expect = 7.2
Identities = 18/65 (27%), Positives = 23/65 (35%)
Frame = -1
Query: 352 RRNGRGRTLPPSRRSAAAVEPGVGGERLSSSGPMRRQSPPXXXXXXXXXX*DCAARYRHS 173
+R + + LPP AAA P G R S G + C RY+ S
Sbjct: 317 KRGRKPKQLPPHPSGAAASAPAPGDRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYK-S 375
Query: 172 SALAP 158
L P
Sbjct: 376 GRLLP 380
>04_03_0765 +
19376949-19377156,19377637-19377833,19378259-19378448,
19380263-19380654,19380689-19380802,19381159-19381593,
19381936-19382038,19382080-19382177,19383217-19383552
Length = 690
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 246 GSLLPVMVTGRPKGAETAPHATVTLARWH 160
G +L ++TGR T PH L WH
Sbjct: 302 GVVLLELITGRKAIDSTRPHVEPNLVSWH 330
>07_03_0324 +
16803652-16803990,16804001-16804054,16804264-16804269,
16804657-16804731,16804864-16804983,16806571-16806762,
16806994-16807077,16807167-16807256,16807832-16807885,
16808006-16808085,16808523-16808633,16808707-16808761,
16808799-16808858
Length = 439
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 337 GRTLPPSRRSAAAVEPGVGGERLSSSGPMRRQSPP 233
G + PSRR +A P + G + RR++PP
Sbjct: 18 GASRVPSRRPSAGAAPRLRGASCARGRQPRRRAPP 52
>06_02_0112 -
11979548-11979725,11980236-11980321,11980777-11980863,
11981722-11981997
Length = 208
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 228 MVTGRPKGAETAPHATVTLARWHQEDGTTR 139
M T P GA+ P T T QE+G TR
Sbjct: 121 MDTLGPSGADVGPSGTTTDGSQPQEEGITR 150
>01_06_1604 +
38567374-38567391,38567505-38567636,38569377-38569445,
38569545-38569775,38570883-38571013,38571471-38571629,
38573078-38573366
Length = 342
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 352 RRNGRGRTLPPSRRSAAAVEPGVGGERLSSSGP 254
RR+G GR L SR + G GG GP
Sbjct: 6 RRHGGGRILRRSREEKRRLSEGGGGASQQPQGP 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,747,159
Number of Sequences: 37544
Number of extensions: 197382
Number of successful extensions: 992
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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