Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1374X
         (352 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        28   2.4  
SB_36009| Best HMM Match : Collagen (HMM E-Value=0)                    27   3.2  
SB_50761| Best HMM Match : RCSD (HMM E-Value=4.4)                      27   4.3  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      27   4.3  
SB_51123| Best HMM Match : PDZ (HMM E-Value=3.8e-18)                   27   5.7  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               27   5.7  
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)                27   5.7  
SB_51557| Best HMM Match : Collagen (HMM E-Value=0.56)                 26   9.9  
SB_43586| Best HMM Match : HALZ (HMM E-Value=1.8)                      26   9.9  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 352 RRNGRGRTLPPSRRSAAAVEPGVGGERLSSSGPMRRQSPP 233
           R +   R+ PP RRS +   P     R S+S P R+  PP
Sbjct: 552 RTSPNNRSPPPRRRSPSPRRPSPSPRRRSTS-PSRKSPPP 590


>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 687

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 331 TLPPSRRSAAAVEPGVGGERLSSSGPMRRQSP 236
           T+PP  R+ A   PG+GG++     P +  +P
Sbjct: 371 TIPPQGRAGAPGSPGLGGQKGDQGMPGKPGNP 402


>SB_50761| Best HMM Match : RCSD (HMM E-Value=4.4)
          Length = 482

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 352 RRNGRGRTLPPSRRSAAAVEPGVGGERLSSSGPMRRQS--PP 233
           R+  R    PP  R+     P  GGER+  S  M RQ   PP
Sbjct: 175 RQGSRMDDRPPPSRNGELPPPSRGGERMLPSRQMSRQGDVPP 216


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 182 VACGAVSAPLGRPVTITGRRL-PPHRAGAGQTLSSDPRL 295
           ++C A++ P+  P T+T   +  P+ A A  T+++ P +
Sbjct: 720 ISCEAINLPVVLPTTVTSTSVFTPYTANAPPTVATQPSI 758


>SB_51123| Best HMM Match : PDZ (HMM E-Value=3.8e-18)
          Length = 182

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 212 GRPVTITGRRLPPHRAGAGQTLSSDPRLDCG 304
           G  ++I GRRL P  +    +LSS P+L  G
Sbjct: 135 GLGLSIVGRRLKPGNSSRPSSLSSLPQLQIG 165


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -1

Query: 322 PSRRSAAAVEPGVGG---ERLSSSGPMRRQSP 236
           PSRR     E GVG    ER  S+G  RRQ+P
Sbjct: 331 PSRRQNWTKEDGVGAMRLERAMSAGRDRRQNP 362


>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
          Length = 794

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 17  GQNQPAGSERDTPPTGLLFHSMFGDDSDDENADRIA 124
           G+ +P G +   PP  + F S+ G + DD+   R A
Sbjct: 638 GKLKPLGEKLFPPPRNVHFSSVSGSEDDDDFTSRKA 673


>SB_51557| Best HMM Match : Collagen (HMM E-Value=0.56)
          Length = 697

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 292 PGVGGERLSSSGPMRRQSPP 233
           P VGG  +  +GPM R  PP
Sbjct: 404 PAVGGGAMDGAGPMIRLPPP 423


>SB_43586| Best HMM Match : HALZ (HMM E-Value=1.8)
          Length = 281

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 258 PELDKRSPPTPGSTAAA 308
           PEL K++PP P  TAA+
Sbjct: 13  PELLKKNPPAPAPTAAS 29


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -1

Query: 322  PSRRSAAAVEPGVGGERLSSSGPMRRQSPP 233
            P R S  A  PG  G   + SGP   Q PP
Sbjct: 3787 PGRPSTIAGPPGPPGRSKNISGPPGPQGPP 3816


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,815,480
Number of Sequences: 59808
Number of extensions: 183206
Number of successful extensions: 511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)