Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1374X
(352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical pr... 27 5.0
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 26 6.6
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 26 6.6
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 26 6.6
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 26 8.7
Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical pr... 26 8.7
U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon gu... 26 8.7
U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon gu... 26 8.7
U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific ... 26 8.7
U27312-2|AAA68246.4| 206|Caenorhabditis elegans Hypothetical pr... 26 8.7
AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein. 26 8.7
>Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical
protein F13B12.1 protein.
Length = 511
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 77 SMFGDDSDDENADR 118
++FGDDSDD++ DR
Sbjct: 146 NLFGDDSDDDDEDR 159
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 215 RPVTITGRRLPPHRAGAGQT 274
RPVT G R PP R G G +
Sbjct: 159 RPVTQQGLRAPPSRMGTGNS 178
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/56 (25%), Positives = 21/56 (37%)
Frame = +1
Query: 1 PGYPAGPEPACRVGTRYTADRVALPQYVXXXXXXXKCGPHRSPQPPTRRPVLLVPA 168
PG+ P + +A A+P+ + P +PQ P PV PA
Sbjct: 554 PGFEVTGPPQPTPQVQISAQEAAIPEKMDTSEAATAARPPSTPQAPQAPPVQAAPA 609
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/56 (25%), Positives = 21/56 (37%)
Frame = +1
Query: 1 PGYPAGPEPACRVGTRYTADRVALPQYVXXXXXXXKCGPHRSPQPPTRRPVLLVPA 168
PG+ P + +A A+P+ + P +PQ P PV PA
Sbjct: 554 PGFEVTGPPQPTPQVQISAQEAAIPEKMDTSEAATAARPPSTPQAPQAPPVQAAPA 609
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 325 PPSRRSAAAVEPGVGGERLSSSGPMRRQSPP 233
PP+ SA P ++ SS P+ +Q PP
Sbjct: 439 PPTSPSAPVQAPNTPTQKASSQDPIVQQDPP 469
>Z71181-4|CAA94897.1| 486|Caenorhabditis elegans Hypothetical
protein K07C5.4 protein.
Length = 486
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 47 DTPPTGLLFHSMFGDDSDDENADRIA 124
+TP GLLFHS F + +N R++
Sbjct: 350 NTPKYGLLFHSSFIGKAGTKNKGRVS 375
>U88183-2|AAM69080.1| 1273|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform b protein.
Length = 1273
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 222 TGRPKGAETAPHATVTLARWHQEDGTTRRRLRTAMR 115
T + +++ PH V+ + H DGT + RT R
Sbjct: 1078 TSGSQRSDSPPHTDVSYVQLHSSDGTGSSKERTGER 1113
>U88183-1|AAB52657.2| 1269|Caenorhabditis elegans Sensory axon
guidance protein 3,isoform a protein.
Length = 1269
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 222 TGRPKGAETAPHATVTLARWHQEDGTTRRRLRTAMR 115
T + +++ PH V+ + H DGT + RT R
Sbjct: 1078 TSGSQRSDSPPHTDVSYVQLHSSDGTGSSKERTGER 1113
>U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific
family, class qprotein 4 protein.
Length = 373
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 306 PPQSSRGSEESVCPAPAL*GGSLLPVMVTGRPKGAET 196
PP +S + P A GGS V G P+GA T
Sbjct: 83 PPAASNDAGYFATPPAAPAGGSSTMTAVGGAPRGAST 119
>U27312-2|AAA68246.4| 206|Caenorhabditis elegans Hypothetical
protein F26A1.4 protein.
Length = 206
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 25 PACRVGTRYTADRVALPQYVXXXXXXXKCGPHRSPQP 135
P C +G R+ L YV KCG R+P+P
Sbjct: 24 PNCCIGAT-DCTRIYLIDYVLTRQYLDKCGTVRNPRP 59
>AF041053-1|AAC38848.1| 1273|Caenorhabditis elegans SAX-3 protein.
Length = 1273
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 222 TGRPKGAETAPHATVTLARWHQEDGTTRRRLRTAMR 115
T + +++ PH V+ + H DGT + RT R
Sbjct: 1078 TSGSQRSDSPPHTDVSYVQLHSSDGTGSSKERTGER 1113
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,957,749
Number of Sequences: 27780
Number of extensions: 129207
Number of successful extensions: 310
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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