Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1374X
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   9.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   9.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 234 GGDCLLIGPELDKRSPPTP 290
           GG CL+ GP L    PP P
Sbjct: 431 GGSCLIHGPPL----PPLP 445


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 234 GGDCLLIGPELDKRSPPTP 290
           GG CL+ GP L    PP P
Sbjct: 431 GGSCLIHGPPL----PPLP 445


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 115 PHRSPQPPTR 144
           PH+SPQ P R
Sbjct: 27  PHQSPQAPQR 36


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 81  ILWKSNPVGGVSRSDPAGWFWPSGVSR 1
           I W+S  V  V+ ++   W W   + R
Sbjct: 54  INWRSYVVCDVAYNNVNNWLWTPFIER 80


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 41   PTRQAGSGPAGY 6
            P+RQ GSG  G+
Sbjct: 1923 PSRQTGSGHGGH 1934


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 219 GRPKGAETAPHATVT 175
           G P GA T P+  VT
Sbjct: 412 GPPTGATTGPNEIVT 426


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 219 GRPKGAETAPHATVT 175
           G P GA T P+  VT
Sbjct: 398 GPPTGATTGPNEIVT 412


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 219 GRPKGAETAPHATVT 175
           G P GA T P+  VT
Sbjct: 432 GPPTGATTGPNEIVT 446


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 219 GRPKGAETAPHATVT 175
           G P GA T P+  VT
Sbjct: 381 GPPTGATTGPNEIVT 395


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = -2

Query: 36  PAGWFW 19
           PAGW W
Sbjct: 162 PAGWIW 167


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 1   PGYPAGPEPACRVGTRY 51
           P +  G     RVGTRY
Sbjct: 353 PNWVMGNHDRVRVGTRY 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,395
Number of Sequences: 438
Number of extensions: 1529
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)