Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1374X
         (352 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    31   0.16 
At5g24750.1 68418.m02921 expressed protein                             27   3.5  
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil...    26   6.1  
At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil...    26   6.1  
At2g30940.2 68415.m03773 protein kinase family protein contains ...    26   8.1  

>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 340 RGRTLPPSRRSAAAVEPGV-GGERLSSSGPMRRQSPP 233
           RGRT P  RR + +V PG+    R  S  P+R +SPP
Sbjct: 731 RGRTPPRYRRRSRSVSPGLCYRNRRYSRSPIRSRSPP 767


>At5g24750.1 68418.m02921 expressed protein
          Length = 520

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 72  KSNPVGGVSRSDPAGWFWP 16
           K  P+G VS SD   W WP
Sbjct: 177 KEAPIGKVSWSDVTHWMWP 195


>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
           to XNop56 protein [Xenopus laevis] GI:14799394; contains
           Pfam profile PF01798: Putative snoRNA binding domain
          Length = 499

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 47  DTPPTGLLFHSMFGDDSDDENADRIA 124
           +TP  GL+FHS F   +  +N  RIA
Sbjct: 347 NTPKYGLIFHSSFIGRASAKNKGRIA 372


>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
           to XNop56 protein [Xenopus laevis] GI:14799394; contains
           Pfam profile PF01798: Putative snoRNA binding domain
          Length = 522

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 47  DTPPTGLLFHSMFGDDSDDENADRIA 124
           +TP  GL+FHS F   +  +N  RIA
Sbjct: 347 NTPKYGLIFHSSFIGRASAKNKGRIA 372


>At2g30940.2 68415.m03773 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 447

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 246 GSLLPVMVTGRPKGAETAPHATVTLARWHQE 154
           G+++  +V+GR    +++PH  V L  W +E
Sbjct: 340 GNMIMELVSGRVSVDQSSPHVRVYLVDWIKE 370


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,681,801
Number of Sequences: 28952
Number of extensions: 114864
Number of successful extensions: 356
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)