Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1372
         (839 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q899I0 Cluster: Stage V sporulation protein B; n=12; Cl...    35   2.9  
UniRef50_A0DR56 Cluster: Chromosome undetermined scaffold_6, who...    34   5.1  
UniRef50_A3U8I8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  
UniRef50_A1ZCY2 Cluster: Sensor protein; n=1; Microscilla marina...    33   6.8  
UniRef50_UPI0000499D37 Cluster: hypothetical protein 102.t00018;...    33   8.9  
UniRef50_Q30UF3 Cluster: 2-oxoacid:acceptor oxidoreductase, delt...    33   8.9  
UniRef50_Q8I3W3 Cluster: Putative uncharacterized protein PFE072...    33   8.9  

>UniRef50_Q899I0 Cluster: Stage V sporulation protein B; n=12;
           Clostridium|Rep: Stage V sporulation protein B -
           Clostridium tetani
          Length = 517

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 25/73 (34%), Positives = 39/73 (53%)
 Frame = +2

Query: 167 CLQKQNFLKIEFKKSIIPPYRINIFLLNHVSVSYYINLFYK*TYYA*I*LCIRMRGLP*I 346
           C+++   +KI++KK I+ P   +I ++  V  SY  NL YK T    I   I +     I
Sbjct: 431 CIKRMLKVKIQYKKVILAPLLASIIMILGVMTSY--NLIYKITLKNSISCLISI-----I 483

Query: 347 LKTIVYSICILVL 385
              I+YSI ++VL
Sbjct: 484 FGIIIYSILVIVL 496


>UniRef50_A0DR56 Cluster: Chromosome undetermined scaffold_6, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_6,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 215

 Score = 33.9 bits (74), Expect = 5.1
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 235 YIFVKSCLCKLLHKSIL*VDILCLDITLYKNEGITINFENYCIQYMYISTYM-VFCY 402
           Y F   CL +L HKS     + C D   Y ++   +   +YC+ Y+Y  T +  FCY
Sbjct: 94  YFFYTQCLSQLKHKSFR-TSVYCPD---YTHQVFILLSCSYCLDYIYNCTILGAFCY 146


>UniRef50_A3U8I8 Cluster: Putative uncharacterized protein; n=1;
           Croceibacter atlanticus HTCC2559|Rep: Putative
           uncharacterized protein - Croceibacter atlanticus
           HTCC2559
          Length = 465

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 331 GITINFENYCIQYMYISTYMVFCYNCHLFSDRVFKLNLTKLKIGIVMFTVKSRG 492
           G   NF+ Y  +++Y  +++V  Y   +   +  KLN  KL   IV+ ++   G
Sbjct: 324 GAITNFKEYNFRFLYSGSFLVLVYFFSIILRKTSKLNFFKLTYTIVIVSISYNG 377


>UniRef50_A1ZCY2 Cluster: Sensor protein; n=1; Microscilla marina
           ATCC 23134|Rep: Sensor protein - Microscilla marina ATCC
           23134
          Length = 1248

 Score = 33.5 bits (73), Expect = 6.8
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +1

Query: 364 QYMYISTYMVFCYNCHLFSDRVFKLNLTKLKIGIVMFTVKSRGLQYDLLPT 516
           QY   +TY+   YN H+ SD   K++LTK K    +F+ K++   + L P+
Sbjct: 135 QYPISNTYLKSGYNAHIISDNTVKISLTKNKRHRNIFS-KNKQFLFSLEPS 184


>UniRef50_UPI0000499D37 Cluster: hypothetical protein 102.t00018; n=1;
            Entamoeba histolytica HM-1:IMSS|Rep: hypothetical protein
            102.t00018 - Entamoeba histolytica HM-1:IMSS
          Length = 1717

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 292  DILCLDITLYKNEGITINFENYCIQYMYISTYMVFCYNCHL 414
            +I C+ I L  N  I    ENY +    +S+ + F +NCH+
Sbjct: 1598 EIQCIGIILALNHNIPSLLENYSLLSPIVSSCLEFIFNCHI 1638


>UniRef50_Q30UF3 Cluster: 2-oxoacid:acceptor oxidoreductase, delta
           subunit, pyruvate/2- ketoisovalerate; n=1;
           Thiomicrospira denitrificans ATCC 33889|Rep:
           2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2- ketoisovalerate - Thiomicrospira
           denitrificans (strain ATCC 33889 / DSM 1351)
          Length = 131

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +1

Query: 361 IQYMYISTYMVFCYNCHLFSDRVFKLNLTKLKIGIVMFTVKSRGLQYDLLPTHSSSLLML 540
           I+ ++   Y + C  C ++   V  ++  K  IG+ M   K  G+  ++ PT+  SLLM 
Sbjct: 51  IKPIFNKDYCIDCQFCWVYCPDVSIISRDKKLIGVDMDHCKGCGICVEVCPTNPKSLLMF 110

Query: 541 EQQ 549
            +Q
Sbjct: 111 PEQ 113


>UniRef50_Q8I3W3 Cluster: Putative uncharacterized protein PFE0725c;
           n=4; Plasmodium|Rep: Putative uncharacterized protein
           PFE0725c - Plasmodium falciparum (isolate 3D7)
          Length = 199

 Score = 33.1 bits (72), Expect = 8.9
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 313 TLYKNEGITINFENYCIQYMYISTYMVFCYNCHLFSDRVFKLNLTKLKIGIVMFTVKSR 489
           TLY    I IN   +   Y+YI+ ++ FCYN  +  + +    +T L + ++ F +  R
Sbjct: 51  TLYVENNI-INKRMHTHIYIYINIFLYFCYNFIIILELLQSFEITSLILSLLSFIILIR 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,445,786
Number of Sequences: 1657284
Number of extensions: 12886564
Number of successful extensions: 33409
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33384
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73373641369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)