Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1372
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    27   2.5  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   3.3  
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    26   5.8  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    26   7.6  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +2

Query: 176 KQNFLKIEFKKSIIPPY-RINIFLLNHVSVSYY 271
           K N L+IE+ KS+IP Y ++N+  +N  + SY+
Sbjct: 504 KNNSLEIEY-KSVIPEYSKLNVTAVNLTNHSYW 535


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -1

Query: 659 WLVFKKDKHKIN*KIFDILSY*LFQILFKY*FLTLTHCCSSIS 531
           W+   KD + ++ +IFD++ Y +F  ++ Y    L   C+S++
Sbjct: 216 WISLYKDVYVVS-EIFDMIQYEVFPAIWVYSICHLLKQCTSVT 257


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 46  KNRSSKKKVNFF*LACLVVGLLPLIIYFIYRKV 144
           K+ SS++K +FF LAC  V     +  F+ R V
Sbjct: 100 KDVSSRQKRSFFKLACFAVFFFVYLFLFVSRLV 132


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 624 INFMFILFKY*PFTDDEYNFLNIIV*YNICFHSIPV 731
           +N + I+ K    TDDE NF   ++  +I +H+I +
Sbjct: 236 VNIIPIIAKADTLTDDELNFTKEMILRDIQYHNIRI 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,509
Number of Sequences: 5004
Number of extensions: 62192
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)