Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1372
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1446 + 33670845-33670953,33670980-33671048,33671579-33671967     29   6.1  
10_07_0084 + 12748685-12749146                                         28   8.1  

>04_04_1446 + 33670845-33670953,33670980-33671048,33671579-33671967
          Length = 188

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 222 GGIMLFLNSIFRKFCFCRHCFLNC 151
           G I+ F NS+FR     RH F+ C
Sbjct: 62  GQIITFANSVFRNLEIVRHLFMEC 85


>10_07_0084 + 12748685-12749146
          Length = 153

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 563 LTLTHCCSSISKLLLWVGSKSYCN-PRDFTVNITIPIFNFV 444
           L LTHC  ++  L +W+   +     +DF  +  +P+ NF+
Sbjct: 112 LVLTHCLLTVEILSIWIVLSNIMRWKKDFEFSAYMPLQNFI 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,208,635
Number of Sequences: 37544
Number of extensions: 278028
Number of successful extensions: 485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)