Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1372
         (839 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   3.6  
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   3.6  
SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   3.6  
SB_47158| Best HMM Match : pKID (HMM E-Value=0.22)                     28   8.2  
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_14011| Best HMM Match : DUF765 (HMM E-Value=1.6)                    28   8.2  
SB_4397| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 183 FCFCRHCFLNCYCYF 139
           +C+C +C   CYCY+
Sbjct: 493 YCYCYYCCYYCYCYY 507


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 31  IAILSKNRSSKKKVNFF*LACLVVGLLPLIIYFIYRKV 144
           IA+++KNR  +  VNFF L  + VG + + ++F+ R V
Sbjct: 64  IAVVAKNRRMRTPVNFF-LINMAVGDVLITVFFMPRMV 100


>SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1125

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 31  IAILSKNRSSKKKVNFF*LACLVVGLLPLIIYFIYRKV 144
           IA+++KNR  +  VNFF L  + VG + + ++F+ R V
Sbjct: 807 IAVVAKNRRMRTPVNFF-LINMAVGDVLITVFFMPRMV 843


>SB_47158| Best HMM Match : pKID (HMM E-Value=0.22)
          Length = 309

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +1

Query: 289 VDI-LCLDITLYKNEGITINFENYCI 363
           VD+ +C++I+L  NEG ++  EN+C+
Sbjct: 26  VDVPMCIEISLKTNEGDSMVLENWCL 51


>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 548 CCSSISKLLLWVGSKSYCN--PRDFTVN 471
           CC S SK + WV SK  CN  P   TVN
Sbjct: 693 CCHSSSKAIQWV-SKKLCNGFPHHSTVN 719


>SB_14011| Best HMM Match : DUF765 (HMM E-Value=1.6)
          Length = 217

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +1

Query: 289 VDI-LCLDITLYKNEGITINFENYCI 363
           VD+ +C++I+L  NEG ++  EN+C+
Sbjct: 26  VDVPMCIEISLKTNEGDSMVLENWCL 51


>SB_4397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 317 CIRMRGLP*ILKTIVYSICILVLIWCSVITVI 412
           C+R + L  I KTI   + +LVL+W   IT +
Sbjct: 230 CVRKKELQ-IAKTIFTLLAVLVLLWSPTITAV 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,575,483
Number of Sequences: 59808
Number of extensions: 380335
Number of successful extensions: 875
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)