Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1369
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    32   0.12 
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    27   3.3  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   4.3  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    27   4.3  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   5.7  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    26   7.6  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = -1

Query: 762  FFITALIFFWDPLMSFPAHNKQDKADSFFTTQRLNYISNQTELLRPKVAQLRPSISAKSH 583
            + ++ + F  +PL+ F   +K    D++ T Q LNYI NQ     P ++ L   +     
Sbjct: 1132 YLLSPVDFANNPLLLFQIISKYKIKDTYATFQTLNYIQNQQPTKWPNLSCLENLMIPHDG 1191

Query: 582  RLSRPWKPVLRTY 544
            R+S  +   L+ Y
Sbjct: 1192 RISAFYIASLQKY 1204


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 735 WDPLMSFPAHNKQDKADSFFTTQRLNYISNQTELLR 628
           +DP  SF A     K     T  R +YIS  T++LR
Sbjct: 601 FDPQSSFSAEKIFSKLKHLLTRTRDSYISEDTKILR 636


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 368 RAGGH-RSRQARGRPGHRTRTQPAAEGRQRTNRSEADKRDIAGKF 237
           R GG  R R        R + Q   E  +   +SEA+K+  +GKF
Sbjct: 642 RVGGPIRQRYLDAEEAKRQKVQAEREAAKAATKSEAEKQKPSGKF 686


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
 Frame = -3

Query: 817  SALLANETMDFKVIYRESFFYHGSNFLLGSANEFSRS*QTGQGGLVLHDATPQLHIQSNR 638
            + +   E   F  I ++S   H S     S N       TG    +  D T  L +QSN 
Sbjct: 817  NTIRTTERSTFSEIMKDSPSAHASPGAKTSPNASRAPEPTGGTNSISQDTTQSLQMQSNS 876

Query: 637  TAS------SKSRAIETVDIGEVTSSIKTLETSAK 551
              S      SKS+     D   + S+ K   T+AK
Sbjct: 877  VNSSSMVDASKSKEKSGGDTSALDSNAKNEPTAAK 911


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 24/78 (30%), Positives = 35/78 (44%)
 Frame = +3

Query: 129 SLANFFWRITINFVLYQPRRLKEITRYDFRFRVASSELTGDVSLICLASVSALSTFGCWL 308
           S+ N+ WR  IN  L   R +++ITR ++      S LT  V     A  +     G  L
Sbjct: 403 SIGNWGWRHEINADLSPARSVQDITR-NYVMDCMDSYLT-SVQTAAQAVDTIGWKMGVML 460

Query: 309 SSSPVARSATCLTTSVAS 362
            +  V   A CL + +AS
Sbjct: 461 LNISVYFEAKCLESKIAS 478


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 759 FITALIFFWDPLMSFPAHNKQDKADSFFTTQRLNYISNQT 640
           F T L++F  PL  +PA  +    +S    +  N I+NQT
Sbjct: 16  FNTPLLWFPQPLKYWPAFQQSHTFNSMSVFKNDNAIANQT 55


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 646 SNRTASSKSRAIETVDIGEVTSSIKTLETSAKNLLRSVSLL 524
           S +T+   ++  ET + GE  +   TLE  A+NL+    +L
Sbjct: 94  SAKTSEETAKPSETREDGEWNTLKNTLEADAQNLMSGFQML 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,629
Number of Sequences: 5004
Number of extensions: 54723
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)