Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1369
         (834 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.38 
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       32   0.66 
SB_6407| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.87 
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)                     31   0.87 
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)                  31   1.5  
SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 30   2.0  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13)               29   4.6  
SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    29   6.1  
SB_23349| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_13769| Best HMM Match : DUF1542 (HMM E-Value=1.1)                   29   6.1  
SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.1  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_29363| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_50672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 22/62 (35%), Positives = 34/62 (54%)
 Frame = -2

Query: 437 QTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADK 258
           +  + +R + GR   D   G+ ER G  RSR+  GR   R+R +P +  R R +R  +D+
Sbjct: 576 ERERLKRRSQGR--PDDKEGR-ERPGRERSRERHGR--ERSRERPRSRERPR-SRERSDR 629

Query: 257 RD 252
           RD
Sbjct: 630 RD 631



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = -2

Query: 467 AGGICGD*QRQTNKSRRETSGRRGEDISSGQGE-RAGGHRSRQARGRPGHRTRTQPAAEG 291
           A  I  D + +  + R +   R  ED    + E R    R R+ R R     R +   E 
Sbjct: 754 ASDISRDREEREKRDREDRDRRDREDREHREREDRERERRDREDRERRDRDERDRRDRED 813

Query: 290 RQRTNRSEADKRD 252
           R+R +R + ++RD
Sbjct: 814 RERRDREDRERRD 826



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -2

Query: 440 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGH--RTRTQPAAEGRQRTNRSE 267
           R+  +  RE   RR  D    +       R R+ R R     R R +   E R+R  + E
Sbjct: 788 RERERRDREDRERRDRDERDRRDREDRERRDREDRERRDREDRERERREREDRERREKEE 847

Query: 266 ADKRD 252
            DKRD
Sbjct: 848 FDKRD 852


>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 428 KSRRETSGRRGEDISS-GQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADKRD 252
           +  R+   RR  D     +GER  G R R  R R   R R +     R+R  RS + ++D
Sbjct: 130 RGERDRDRRRERDRGERDRGERDRGERDRGERDRRRDRDRDRDRDRDRERRRRSRSREKD 189

Query: 251 IAGK 240
             G+
Sbjct: 190 REGE 193


>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 27/81 (33%), Positives = 39/81 (48%)
 Frame = -3

Query: 397  ERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSALTEARQIRETSPVSSDDATLK 218
            E+TLA + ES  EAT  V+ V   A  L+L +    D   T+   I E    + D+   K
Sbjct: 1789 EQTLALLNESCAEATLEVEVVEQTADDLQLVRLYNAD---TKLPVIIEAKTQAQDEPATK 1845

Query: 217  RKSYRVISFSLRG*YKTKFIV 155
            R S++  SFS     +  FI+
Sbjct: 1846 R-SFKKASFSKTAKEQACFII 1865


>SB_6407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 454 AATDSDKQISRAAKLAEDAERTLAAVRESAREATEV--VKHVADLATGLELSQQPKVDSA 281
           A    DK    A+KLA   +  LAA+  +AR A  +    H   +A  L+ S  PKV SA
Sbjct: 136 ATNSGDKNPRLASKLAARCDLDLAALFHTARIADRLWSAMHEVAVAAKLDKSMTPKVSSA 195


>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
          Length = 714

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 454 AATDSDKQISRAAKLAEDAERTLAAVRESAREATEV--VKHVADLATGLELSQQPKVDSA 281
           A    DK    A+KLA   +  LAA+  +AR A  +    H   +A  L+ S  PKV SA
Sbjct: 441 ATNSGDKNPRLASKLAARCDLDLAALFHTARIADRLWSAMHEVAVAAKLDKSMTPKVSSA 500


>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -2

Query: 452 GD*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGR-PGHRTRTQPAAEGRQRTN 276
           GD   QT  S  + +  +  D   G  E+    +    +G+ P  +T ++PA++GR+  +
Sbjct: 427 GDRVSQTQGSASKKTPGKAAD-KKGSAEKKTEDKKAADKGKKPSAKTPSKPASKGRETRS 485

Query: 275 RSEADKRDI 249
            S A K D+
Sbjct: 486 GSAAKKEDV 494


>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
          Length = 265

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
 Frame = -2

Query: 467 AGGICGD*QRQTNKSRRET-----SGRRGEDISSGQGERAGGHRSRQAR--GRPGHRTRT 309
           +G   GD QR+    +  +     S  R +  S+GQ +R G HR R +     P HR+R+
Sbjct: 151 SGSQSGDRQRERRLHKHSSPSISPSPPRRQKYSNGQSDRKGKHRHRDSSSPSPPRHRSRS 210

Query: 308 QPAAEGRQR----TNRSEADKRDIA 246
            P   G +R    T+R++   R ++
Sbjct: 211 -PFRNGNKRKGFPTHRNKQRSRSVS 234


>SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 428  KSRRET-SGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQ 285
            + RRE+  G+  E     +G +  GH  R+ +GR G + + +   +G Q
Sbjct: 900  RQRRESCKGKGREGGKDHEGHKGNGHGGRKGKGRKGRKDKGRMGRKGHQ 948


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = -2

Query: 431 NKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADKRD 252
           N+ R  + G R    S  +  R+ GHRSR  R     R R +    GR R +R     RD
Sbjct: 433 NQHRERSPGHRRRSQSPRRRSRSPGHRSRSPR-----RGRDRDRDRGRDRRDRDRDRDRD 487


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -2

Query: 440 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEAD 261
           R T+ +   T+  +     +  G+ A G     ++G P     ++PA  GR  T R  + 
Sbjct: 686 RSTSAANTTTAPTQTRQKKTSAGKPAAGKNPIDSKGSPTSEKSSRPATRGRPSTGRKPSA 745

Query: 260 K 258
           K
Sbjct: 746 K 746


>SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13)
          Length = 774

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 654 ISNQTELLRPKVAQLRPSISAKSHRLSRPW 565
           I N+T++LR    +L P IS     L RPW
Sbjct: 531 IENKTQVLRAIKRELPPGISQPDINLKRPW 560


>SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 380 GQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADK 258
           GQ   AGG   ++A+ + G +  T+PA   +    + + DK
Sbjct: 281 GQQPAAGGQEPQEAQEQEGQQPGTEPAQSDKSNKKKHKKDK 321


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 467 AGGICGD*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPG 324
           A G  G+   Q  K +  T GR+G   +SG+    G   SR  RGR G
Sbjct: 505 ADGTPGEPGAQGTKRKPGTPGRQGMPGASGRRGAPGAKGSRGERGRVG 552


>SB_23349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = -3

Query: 652 IQSNRTASSKSRAIETVDIGEVTSSIKTLETSAKNLLRSVSLLNIYT 512
           IQS  +A S+   + T+D+  + ++I T + S +  L ++ + +IYT
Sbjct: 463 IQSALSAISRYSFLVTIDVTSIYTNIPTTKVSRQPSLVTIDVTSIYT 509


>SB_13769| Best HMM Match : DUF1542 (HMM E-Value=1.1)
          Length = 369

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 359 GHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADKRD 252
           G R    R RP  R +T+P ++GR+ T R+  ++RD
Sbjct: 271 GPRPTGQRRRPTGR-KTRPTSQGRRPTGRTSIEERD 305


>SB_7782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 670 ATPQLHIQSN-RTASSKSRAIE-TVDIGEVTSSIKTLETSAKNL 545
           ATP+  ++S  ++  +KSR +  TVD  E +S   +LE   KNL
Sbjct: 100 ATPEPSLKSKAKSKKNKSRTLPMTVDSNEESSDTSSLENKKKNL 143


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 401 RGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADK 258
           RG D   G+G+   G+ +R  RG+PG+R R Q A   R+    +  D+
Sbjct: 802 RGRDAPPGRGQ---GYTNR-GRGQPGNRYRDQGAPWDRRPERDNSRDR 845


>SB_29363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 424 RAAKLAEDAERTLAAVRESAREATEVVKHVADLA 323
           R AK+A  A RTL A+R + +     VK  A L+
Sbjct: 53  RCAKIATKANRTLGAIRRTLKPCAPAVKERAYLS 86


>SB_50672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 694 QGGLVLHDATPQLHIQSNRTASSKSRAIETVDIGEVTS 581
           + GL L+  T QL++++NR   S S    +V IG+  S
Sbjct: 248 ESGLCLNANTLQLYMEANRLVGSDSMVDASVSIGDKVS 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,237,105
Number of Sequences: 59808
Number of extensions: 395764
Number of successful extensions: 1251
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)