Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1369
         (834 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    31   0.057
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          30   0.100
AY062432-1|AAL47188.1|  391|Anopheles gambiae putative odorant r...    24   6.6  
AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical prote...    23   8.7  
AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical prote...    23   8.7  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 30.7 bits (66), Expect = 0.057
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -2

Query: 443  QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQP---AAEGRQRTNR 273
            QR++    R  SG R     SG G RAG      +R R   R+R++    +A+G +  +R
Sbjct: 1062 QRRSRSRSRSGSGSRSRS-RSGSGSRAGSRAGSGSRSRSRSRSRSRSRSGSAKGSRSRSR 1120

Query: 272  S 270
            S
Sbjct: 1121 S 1121


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 29.9 bits (64), Expect = 0.100
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = -2

Query: 464 GGICGD*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQ 285
           GG  GD ++++++SR ++  +     S          RSR +R R   RT +Q  +  + 
Sbjct: 395 GGTVGDGKKRSSRSRSKSLSKSSRSRSRSLSRSVSRSRSRGSRSR--SRT-SQSRSRSKT 451

Query: 284 RTNRSEA 264
           RT+RS +
Sbjct: 452 RTSRSRS 458


>AY062432-1|AAL47188.1|  391|Anopheles gambiae putative odorant
           receptor Or5 protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +1

Query: 88  NIDLIIKNHVEVLFHWQIFFGGL 156
           +++ +++   E++F W + FG L
Sbjct: 57  DLETMVRGTAELIFEWNVLFGML 79


>AJ441131-2|CAD29631.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 377 QGERAGGHRSRQA--RGRPGHRTRTQPAAE 294
           +G R G   S  A  R R  H TRT+ AAE
Sbjct: 177 RGHRCGRTESDNAKTRRRARHNTRTKKAAE 206


>AJ439398-1|CAD28124.1|  208|Anopheles gambiae hypothetical protein
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 377 QGERAGGHRSRQA--RGRPGHRTRTQPAAE 294
           +G R G   S  A  R R  H TRT+ AAE
Sbjct: 177 RGHRCGRTESDNAKTRRRTRHNTRTKKAAE 206


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 712,522
Number of Sequences: 2352
Number of extensions: 12740
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88065063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)