Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1369
(834 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 31 3.9
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 31 3.9
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 31 3.9
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 31 3.9
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 31 3.9
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 31 3.9
Y10351-1|CAA71377.1| 711|Homo sapiens nuclear protein SDK3 prot... 31 5.1
U77718-1|AAB48304.1| 743|Homo sapiens pinin protein. 31 5.1
U59479-1|AAB03391.1| 99|Homo sapiens neutrophil protein protein. 31 5.1
EF199840-1|ABM90426.1| 508|Homo sapiens erasin protein. 31 5.1
D87684-1|BAA13437.1| 529|Homo sapiens KIAA0242 protein protein. 31 5.1
BC062602-1|AAH62602.1| 717|Homo sapiens pinin, desmosome associ... 31 5.1
BC035594-1|AAH35594.1| 508|Homo sapiens UBXD2 protein protein. 31 5.1
AF195139-1|AAG33941.1| 717|Homo sapiens pinin protein. 31 5.1
AF112222-1|AAF17209.1| 717|Homo sapiens nuclear protein SDK3 pr... 31 5.1
AC011893-2|AAX88923.1| 508|Homo sapiens unknown protein. 31 5.1
Y09703-1|CAA70874.1| 586|Homo sapiens MEMA protein. 31 6.8
D49677-1|BAA08533.1| 482|Homo sapiens U2AF1-RS2 protein. 31 6.8
BC113480-1|AAI13481.1| 482|Homo sapiens zinc finger (CCCH type)... 31 6.8
BC113454-1|AAI13455.1| 482|Homo sapiens zinc finger (CCCH type)... 31 6.8
AK223612-1|BAD97332.1| 717|Homo sapiens pinin, desmosome associ... 31 6.8
Y08266-1|CAA69592.1| 191|Homo sapiens DAN15 protein. 30 9.0
BC050451-1|AAH50451.2| 482|Homo sapiens zinc finger (CCCH type)... 30 9.0
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 31.5 bits (68), Expect = 3.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -2
Query: 428 KSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRT 279
+SR T RRG S R+G RSR R R+RT R R+
Sbjct: 657 RSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRS 706
Score = 30.3 bits (65), Expect = 9.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -2
Query: 440 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQ--ARGRPGHRT--RTQPAAEGRQRTNR 273
R++ +SR T RRG S + R G RSR RGR RT R + +R N+
Sbjct: 676 RRSGRSRSRTPARRGR--SRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNK 733
Query: 272 SEADKR 255
S +R
Sbjct: 734 SRTSQR 739
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 31.5 bits (68), Expect = 3.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -2
Query: 428 KSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRT 279
+SR T RRG S R+G RSR R R+RT R R+
Sbjct: 657 RSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRS 706
Score = 30.3 bits (65), Expect = 9.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -2
Query: 440 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQ--ARGRPGHRT--RTQPAAEGRQRTNR 273
R++ +SR T RRG S + R G RSR RGR RT R + +R N+
Sbjct: 676 RRSGRSRSRTPARRGR--SRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNK 733
Query: 272 SEADKR 255
S +R
Sbjct: 734 SRTSQR 739
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 31.5 bits (68), Expect = 3.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -2
Query: 428 KSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRT 279
+SR T RRG S R+G RSR R R+RT R R+
Sbjct: 657 RSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRS 706
Score = 30.3 bits (65), Expect = 9.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -2
Query: 440 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQ--ARGRPGHRT--RTQPAAEGRQRTNR 273
R++ +SR T RRG S + R G RSR RGR RT R + +R N+
Sbjct: 676 RRSGRSRSRTPARRGR--SRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNK 733
Query: 272 SEADKR 255
S +R
Sbjct: 734 SRTSQR 739
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 31.5 bits (68), Expect = 3.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -2
Query: 428 KSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRT 279
+SR T RRG S R+G RSR R R+RT R R+
Sbjct: 622 RSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRS 671
Score = 30.3 bits (65), Expect = 9.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -2
Query: 440 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQ--ARGRPGHRT--RTQPAAEGRQRTNR 273
R++ +SR T RRG S + R G RSR RGR RT R + +R N+
Sbjct: 641 RRSGRSRSRTPARRGR--SRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNK 698
Query: 272 SEADKR 255
S +R
Sbjct: 699 SRTSQR 704
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 31.5 bits (68), Expect = 3.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -2
Query: 428 KSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRT 279
+SR T RRG S R+G RSR R R+RT R R+
Sbjct: 447 RSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRS 496
Score = 30.3 bits (65), Expect = 9.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -2
Query: 440 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQ--ARGRPGHRT--RTQPAAEGRQRTNR 273
R++ +SR T RRG S + R G RSR RGR RT R + +R N+
Sbjct: 466 RRSGRSRSRTPARRGR--SRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNK 523
Query: 272 SEADKR 255
S +R
Sbjct: 524 SRTSQR 529
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 31.5 bits (68), Expect = 3.9
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = -2
Query: 428 KSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRT 279
+SR T RRG S R+G RSR R R+RT R R+
Sbjct: 705 RSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRS 754
Score = 30.3 bits (65), Expect = 9.0
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -2
Query: 440 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQ--ARGRPGHRT--RTQPAAEGRQRTNR 273
R++ +SR T RRG S + R G RSR RGR RT R + +R N+
Sbjct: 724 RRSGRSRSRTPARRGR--SRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNK 781
Query: 272 SEADKR 255
S +R
Sbjct: 782 SRTSQR 787
>Y10351-1|CAA71377.1| 711|Homo sapiens nuclear protein SDK3
protein.
Length = 711
Score = 31.1 bits (67), Expect = 5.1
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 443 QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEA 264
+R ++ RR+TSG SS G S+ R + ++ +R++RSE
Sbjct: 641 RRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSER 700
Query: 263 DKR 255
D++
Sbjct: 701 DRK 703
>U77718-1|AAB48304.1| 743|Homo sapiens pinin protein.
Length = 743
Score = 31.1 bits (67), Expect = 5.1
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 443 QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEA 264
+R ++ RR+TSG SS G S+ R + ++ +R++RSE
Sbjct: 673 RRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSER 732
Query: 263 DKR 255
D++
Sbjct: 733 DRK 735
>U59479-1|AAB03391.1| 99|Homo sapiens neutrophil protein protein.
Length = 99
Score = 31.1 bits (67), Expect = 5.1
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 443 QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEA 264
+R ++ RR+TSG SS G S+ R + ++ +R++RSE
Sbjct: 29 RRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSER 88
Query: 263 DKR 255
D++
Sbjct: 89 DRK 91
>EF199840-1|ABM90426.1| 508|Homo sapiens erasin protein.
Length = 508
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -3
Query: 463 AEFAATDSDKQISRAAKL-AEDAERTLAAVRES-AREATEVVKHVADLATGLELSQQPKV 290
A FA T + + ++AA L A+ AE + RES ARE + V + L G + Q
Sbjct: 281 ARFAKTKEEVEAAKAAALLAKQAE--MEVKRESYARERSTVARIQFRLPDGSSFTNQFPS 338
Query: 289 DSALTEARQ 263
D+ L EARQ
Sbjct: 339 DAPLEEARQ 347
>D87684-1|BAA13437.1| 529|Homo sapiens KIAA0242 protein protein.
Length = 529
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -3
Query: 463 AEFAATDSDKQISRAAKL-AEDAERTLAAVRES-AREATEVVKHVADLATGLELSQQPKV 290
A FA T + + ++AA L A+ AE + RES ARE + V + L G + Q
Sbjct: 302 ARFAKTKEEVEAAKAAALLAKQAE--MEVKRESYARERSTVARIQFRLPDGSSFTNQFPS 359
Query: 289 DSALTEARQ 263
D+ L EARQ
Sbjct: 360 DAPLEEARQ 368
>BC062602-1|AAH62602.1| 717|Homo sapiens pinin, desmosome
associated protein protein.
Length = 717
Score = 31.1 bits (67), Expect = 5.1
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 443 QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEA 264
+R ++ RR+TSG SS G S+ R + ++ +R++RSE
Sbjct: 647 RRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSER 706
Query: 263 DKR 255
D++
Sbjct: 707 DRK 709
>BC035594-1|AAH35594.1| 508|Homo sapiens UBXD2 protein protein.
Length = 508
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -3
Query: 463 AEFAATDSDKQISRAAKL-AEDAERTLAAVRES-AREATEVVKHVADLATGLELSQQPKV 290
A FA T + + ++AA L A+ AE + RES ARE + V + L G + Q
Sbjct: 281 ARFAKTKEEVEAAKAAALLAKQAE--MEVKRESYARERSTVARIQFRLPDGSSFTNQFPS 338
Query: 289 DSALTEARQ 263
D+ L EARQ
Sbjct: 339 DAPLEEARQ 347
>AF195139-1|AAG33941.1| 717|Homo sapiens pinin protein.
Length = 717
Score = 31.1 bits (67), Expect = 5.1
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 443 QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEA 264
+R ++ RR+TSG SS G S+ R + ++ +R++RSE
Sbjct: 647 RRSVDRKRRDTSGLERSPKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSER 706
Query: 263 DKR 255
D++
Sbjct: 707 DRK 709
>AF112222-1|AAF17209.1| 717|Homo sapiens nuclear protein SDK3
protein.
Length = 717
Score = 31.1 bits (67), Expect = 5.1
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = -2
Query: 443 QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEA 264
+R ++ RR+TSG SS G S+ R + ++ +R++RSE
Sbjct: 647 RRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSER 706
Query: 263 DKR 255
D++
Sbjct: 707 DRK 709
>AC011893-2|AAX88923.1| 508|Homo sapiens unknown protein.
Length = 508
Score = 31.1 bits (67), Expect = 5.1
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -3
Query: 463 AEFAATDSDKQISRAAKL-AEDAERTLAAVRES-AREATEVVKHVADLATGLELSQQPKV 290
A FA T + + ++AA L A+ AE + RES ARE + V + L G + Q
Sbjct: 281 ARFAKTKEEVEAAKAAALLAKQAE--MEVKRESYARERSTVARIQFRLPDGSSFTNQFPS 338
Query: 289 DSALTEARQ 263
D+ L EARQ
Sbjct: 339 DAPLEEARQ 347
>Y09703-1|CAA70874.1| 586|Homo sapiens MEMA protein.
Length = 586
Score = 30.7 bits (66), Expect = 6.8
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -2
Query: 443 QRQTNKSRRETSG-RRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSE 267
+R ++ RR+TSG R S G G R S+ R + ++ +R++RSE
Sbjct: 516 RRSVDRKRRDTSGLERSHKSSKGGGSR-DTKGSKDKNSRSDRKRSISESSRSGKRSSRSE 574
Query: 266 ADKR 255
D++
Sbjct: 575 RDRK 578
>D49677-1|BAA08533.1| 482|Homo sapiens U2AF1-RS2 protein.
Length = 482
Score = 30.7 bits (66), Expect = 6.8
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 440 RQTNKSRRETSGR-RGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEA 264
R+ + SR R R D S G+G R+ RSR +R R R+R+Q ++ R R R
Sbjct: 415 RERHNSRSRGRNRDRSRDRSRGRGSRS---RSR-SRSRRSRRSRSQSSSRSRSRGRRRSG 470
Query: 263 DK 258
++
Sbjct: 471 NR 472
>BC113480-1|AAI13481.1| 482|Homo sapiens zinc finger (CCCH type),
RNA-binding motif and serine/arginine rich 2 protein.
Length = 482
Score = 30.7 bits (66), Expect = 6.8
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 440 RQTNKSRRETSGR-RGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEA 264
R+ + SR R R D S G+G R+ RSR +R R R+R+Q ++ R R R
Sbjct: 415 RERHNSRSRGRNRDRSRDRSRGRGSRS---RSR-SRSRRSRRSRSQSSSRSRSRGRRRSG 470
Query: 263 DK 258
++
Sbjct: 471 NR 472
>BC113454-1|AAI13455.1| 482|Homo sapiens zinc finger (CCCH type),
RNA-binding motif and serine/arginine rich 2 protein.
Length = 482
Score = 30.7 bits (66), Expect = 6.8
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 440 RQTNKSRRETSGR-RGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEA 264
R+ + SR R R D S G+G R+ RSR +R R R+R+Q ++ R R R
Sbjct: 415 RERHNSRSRGRNRDRSRDRSRGRGSRS---RSR-SRSRRSRRSRSQSSSRSRSRGRRRSG 470
Query: 263 DK 258
++
Sbjct: 471 NR 472
>AK223612-1|BAD97332.1| 717|Homo sapiens pinin, desmosome
associated protein variant protein.
Length = 717
Score = 30.7 bits (66), Expect = 6.8
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -2
Query: 443 QRQTNKSRRETSG-RRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSE 267
+R ++ RR+TSG R S G G R S+ R + ++ +R++RSE
Sbjct: 647 RRSVDRKRRDTSGLERSHKSSKGGGSR-DTKGSKDKNSRSDRKRSISESSRSGKRSSRSE 705
Query: 266 ADKR 255
D++
Sbjct: 706 RDRK 709
>Y08266-1|CAA69592.1| 191|Homo sapiens DAN15 protein.
Length = 191
Score = 30.3 bits (65), Expect = 9.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -2
Query: 443 QRQTNKSRRETSGRRGEDISSGQ---GERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNR 273
Q+QT+ +++ GRRG +S + G A R Q GRPG A + +R R
Sbjct: 121 QQQTSHFQQQQLGRRGRRRASARPRHGAAATWRRQGQCCGRPGRPPGPAAAEQAGRRGRR 180
Query: 272 SEAD 261
+ D
Sbjct: 181 AAQD 184
>BC050451-1|AAH50451.2| 482|Homo sapiens zinc finger (CCCH type),
RNA-binding motif and serine/arginine rich 2 protein.
Length = 482
Score = 30.3 bits (65), Expect = 9.0
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 440 RQTNKSRRETSGR-RGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEA 264
R+ + SR R R D S G+G R+ RSR R R R+R+Q ++ R R R
Sbjct: 415 RERHNSRSRGRNRDRSRDRSRGRGSRSRS-RSRSCRSR---RSRSQSSSRSRSRGRRRSG 470
Query: 263 DK 258
++
Sbjct: 471 NR 472
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,293,615
Number of Sequences: 237096
Number of extensions: 1827947
Number of successful extensions: 8816
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 8411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8790
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10482413384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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