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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1369
         (834 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-11|AAL50323.1|  663|Caenorhabditis elegans Splicing facto...    32   0.44 
U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing facto...    32   0.44 
U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor...    32   0.44 
U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.       32   0.44 
U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein (sp...    31   1.0  
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    31   1.0  
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    31   1.0  
Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical p...    31   1.3  
U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    30   1.8  
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    29   3.1  
U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF016672-6|AAM34394.2|  165|Caenorhabditis elegans Vig (drosophi...    29   3.1  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    29   4.1  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    29   5.4  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    29   5.4  
AF038606-4|AAB92026.1|  331|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF038606-3|AAX55701.1|  393|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF038606-2|AAX55700.1|  404|Caenorhabditis elegans Hypothetical ...    29   5.4  
AC090999-6|AAK26143.2|  214|Caenorhabditis elegans Hypothetical ...    29   5.4  
AC006670-5|AAF39912.2|  356|Caenorhabditis elegans Hypothetical ...    29   5.4  
AC006670-4|AAU20843.1|  518|Caenorhabditis elegans Hypothetical ...    29   5.4  
AB182367-3|BAD23998.1|  331|Caenorhabditis elegans hypothetical ...    29   5.4  
AB182367-2|BAD23997.1|  393|Caenorhabditis elegans hypothetical ...    29   5.4  
AB182367-1|BAD23996.1|  404|Caenorhabditis elegans hypothetical ...    29   5.4  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   9.5  
U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin (dro...    28   9.5  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   9.5  
U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t prot...    28   9.5  
U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    28   9.5  
AF067608-15|AAO38679.1|  470|Caenorhabditis elegans Hypothetical...    28   9.5  
AF067608-14|AAK95864.1|  551|Caenorhabditis elegans Hypothetical...    28   9.5  

>U32305-11|AAL50323.1|  663|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           b protein.
          Length = 663

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 449 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 270
           D  R+  + R+ +  RR    S    +R+  H+  +  GR  HR+R++ ++  R R NRS
Sbjct: 599 DEDRERKRHRKRSRSRR-RSRSCSPRDRSREHKKSRKSGRH-HRSRSRSSSRDRHRRNRS 656

Query: 269 EADKR 255
            +  R
Sbjct: 657 RSRDR 661


>U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           a protein.
          Length = 749

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 449 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 270
           D  R+  + R+ +  RR    S    +R+  H+  +  GR  HR+R++ ++  R R NRS
Sbjct: 685 DEDRERKRHRKRSRSRR-RSRSCSPRDRSREHKKSRKSGRH-HRSRSRSSSRDRHRRNRS 742

Query: 269 EADKR 255
            +  R
Sbjct: 743 RSRDR 747


>U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           d protein.
          Length = 751

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 449 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 270
           D  R+  + R+ +  RR    S    +R+  H+  +  GR  HR+R++ ++  R R NRS
Sbjct: 687 DEDRERKRHRKRSRSRR-RSRSCSPRDRSREHKKSRKSGRH-HRSRSRSSSRDRHRRNRS 744

Query: 269 EADKR 255
            +  R
Sbjct: 745 RSRDR 749


>U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.
          Length = 749

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 449 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 270
           D  R+  + R+ +  RR    S    +R+  H+  +  GR  HR+R++ ++  R R NRS
Sbjct: 685 DEDRERKRHRKRSRSRR-RSRSCSPRDRSREHKKSRKSGRH-HRSRSRSSSRDRHRRNRS 742

Query: 269 EADKR 255
            +  R
Sbjct: 743 RSRDR 747


>U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform d protein.
          Length = 208

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query: 422 RRETSGRRGEDISSGQGERAGGH-RSRQARGRPGHRTRTQPAAEGRQRT-NRSEADKRDI 249
           RR  S RR       +  R+    RSR++R R   R+R+ P  E R+R+ +RS + KRD+
Sbjct: 89  RRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRS-PVRESRRRSESRSPSPKRDL 147


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query: 422 RRETSGRRGEDISSGQGERAGGH-RSRQARGRPGHRTRTQPAAEGRQRT-NRSEADKRDI 249
           RR  S RR       +  R+    RSR++R R   R+R+ P  E R+R+ +RS + KRD+
Sbjct: 89  RRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRS-PVRESRRRSESRSPSPKRDL 147


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -2

Query: 386 SSGQGERAGGHRSRQARGRPGHRTRTQPAA 297
           SS +  R+  HR R  R RPGHR R  P A
Sbjct: 143 SSPEPPRSSTHRQRIHRIRPGHRIRPSPPA 172


>Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/86 (20%), Positives = 43/86 (50%)
 Frame = -3

Query: 469 MQAEFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKV 290
           ++AE A T ++ Q+    +  E+ ++ +  + +   E  +++K+VAD+   +    Q + 
Sbjct: 729 LRAELAQTANEDQVENLNESIEEMQKKIPLIED---EVKDILKNVADITADMAPVIQERK 785

Query: 289 DSALTEARQIRETSPVSSDDATLKRK 212
           ++  T A   +ET   +S    L+ +
Sbjct: 786 EAEHTLAEIQKETRDFASKSQKLQNE 811


>Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical
           protein F54D5.14 protein.
          Length = 1130

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/86 (20%), Positives = 43/86 (50%)
 Frame = -3

Query: 469 MQAEFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKV 290
           ++AE A T ++ Q+    +  E+ ++ +  + +   E  +++K+VAD+   +    Q + 
Sbjct: 729 LRAELAQTANEDQVENLNESIEEMQKKIPLIED---EVKDILKNVADITADMAPVIQERK 785

Query: 289 DSALTEARQIRETSPVSSDDATLKRK 212
           ++  T A   +ET   +S    L+ +
Sbjct: 786 EAEHTLAEIQKETRDFASKSQKLQNE 811


>U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical
           protein F01F1.7 protein.
          Length = 730

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = -2

Query: 440 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEAD 261
           R   + RRE SG R     S   +R GG R  ++R R   R R       R   + +E D
Sbjct: 93  RDRRRDRRERSGSRDRRRRSRSRDRDGGRRRDRSRSR-DRRDRNDDRKRDRNEDSDNEED 151

Query: 260 KRDIA 246
              +A
Sbjct: 152 VSKMA 156


>U58761-7|AAB00717.1|  481|Caenorhabditis elegans Hypothetical
           protein C01F1.1 protein.
          Length = 481

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 392 DISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADKRDIA 246
           D S G  E  GG   ++A+ +   +   +PA E RQR      DK D+A
Sbjct: 218 DDSDGDDEGEGGDDGKKAKNKKKKKKNAKPAKEKRQRVE----DKDDVA 262


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -2

Query: 422 RRETSGRRGEDISSGQGERAGGH-RSRQARGRPGHRTRTQPAAEGRQRT-NRSEADKRD 252
           RR  S RR       +  R+    RSR++R R   R+R+ P  E R+R+ +RS + KRD
Sbjct: 89  RRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRS-PVRESRRRSESRSPSPKRD 146


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical protein
            F33A8.1 protein.
          Length = 897

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = -2

Query: 452  GD*QRQTNKSRR----ETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQ 285
            GD ++  +K RR    +   R+G +     GER  G R R+ R +     R       + 
Sbjct: 796  GDDRKDRSKDRRRQDSDDEDRKGRERREDSGERRRGDRDRRDRNKDQEDHREDRRDRSKD 855

Query: 284  RTNRSEADKRD 252
            R +R +  + D
Sbjct: 856  REDRRDRRRHD 866


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin protein.
          Length = 897

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = -2

Query: 452  GD*QRQTNKSRR----ETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQ 285
            GD ++  +K RR    +   R+G +     GER  G R R+ R +     R       + 
Sbjct: 796  GDDRKDRSKDRRRQDSDDEDRKGRERREDSGERRRGDRDRRDRNKDQEDHREDRRDRSKD 855

Query: 284  RTNRSEADKRD 252
            R +R +  + D
Sbjct: 856  REDRRDRRRHD 866


>U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical
           protein C07D10.1 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -3

Query: 721 EFSRS*QTGQGGLVLHDATPQLHIQSNRTASSKSRAIETVDIGEVTSSIKTLETSAKNLL 542
           +F  S ++GQ   ++ D    + +  N+T S K + IE  +I +VT S  T+  S + L 
Sbjct: 186 DFVGSSESGQSSGLVFDDNAVIQLMKNQTGSRKIQKIELFNI-KVTVSRHTMIESLRKLA 244

Query: 541 R 539
           R
Sbjct: 245 R 245


>AF016672-6|AAM34394.2|  165|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform b
           protein.
          Length = 165

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 401 RGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEG 291
           RGE +S+  G+R  G   R    R G R   +PA  G
Sbjct: 27  RGERVSNENGDRPQGENRRGGPRRGGERGAARPAGRG 63


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -2

Query: 419 RETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADKR 255
           R + GRR     S  G       S+++R R   RTR+   +  R R+    + +R
Sbjct: 106 RGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSSSRSRSGSRRSSRR 160


>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -2

Query: 404 RRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQ----RTNR-SEADKRDIA 246
           R GE +S+  G+R  G   R    R G R   +PA  G +    R NR  E  K++++
Sbjct: 86  RDGERVSNENGDRPQGENRRGGPRRGGERGAARPAGRGGRGGFTRENREGEEPKQEVS 143


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -2

Query: 449 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 270
           D  R  ++ R++   ++       +  R+   RSR  R R   R R +  +   +R +RS
Sbjct: 67  DRSRSRDRDRKKDRKKKDRSRERDRERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRS 126

Query: 269 EADKR 255
             D+R
Sbjct: 127 GGDRR 131


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -2

Query: 449 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 270
           D  R  ++ R++   ++       +  R+   RSR  R R   R R +  +   +R +RS
Sbjct: 67  DRSRSRDRDRKKDRKKKDRSRERDRERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRS 126

Query: 269 EADKR 255
             D+R
Sbjct: 127 GGDRR 131


>AF038606-4|AAB92026.1|  331|Caenorhabditis elegans Hypothetical
           protein C04C3.5a protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -3

Query: 460 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 281
           EF +   ++  SRA  LAE AE+ L A  ++  + TE + +  +     E     K++  
Sbjct: 87  EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 145

Query: 280 LTEARQIRE 254
             E  Q+++
Sbjct: 146 KREYEQLQK 154


>AF038606-3|AAX55701.1|  393|Caenorhabditis elegans Hypothetical
           protein C04C3.5c protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -3

Query: 460 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 281
           EF +   ++  SRA  LAE AE+ L A  ++  + TE + +  +     E     K++  
Sbjct: 149 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 207

Query: 280 LTEARQIRE 254
             E  Q+++
Sbjct: 208 KREYEQLQK 216


>AF038606-2|AAX55700.1|  404|Caenorhabditis elegans Hypothetical
           protein C04C3.5b protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -3

Query: 460 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 281
           EF +   ++  SRA  LAE AE+ L A  ++  + TE + +  +     E     K++  
Sbjct: 160 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 218

Query: 280 LTEARQIRE 254
             E  Q+++
Sbjct: 219 KREYEQLQK 227


>AC090999-6|AAK26143.2|  214|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.11 protein.
          Length = 214

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/65 (27%), Positives = 35/65 (53%)
 Frame = -3

Query: 682 VLHDATPQLHIQSNRTASSKSRAIETVDIGEVTSSIKTLETSAKNLLRSVSLLNIYTYFF 503
           V+HDA  Q H++     + +++ +  V + E+    +T+E+SAK LL  +    +  Y  
Sbjct: 69  VVHDAD-QKHVREYGNLAKETKILLEVALNELYE--ETMESSAKMLLEELKCARLVFYSL 125

Query: 502 FKLCI 488
           ++ CI
Sbjct: 126 YR-CI 129


>AC006670-5|AAF39912.2|  356|Caenorhabditis elegans Hypothetical
           protein K07A3.3a protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 341 ARGRPGHRTRTQPAAEGRQRTNRSEADKRDI-AGKF**-CDSKAKVVSSNFL*PPRLIQN 168
           A   P  +TR    A   Q+  R  +D+R I A KF    DS A V    F+     +QN
Sbjct: 14  ASANPSIQTRCISIARIDQKIKRGNSDRRVIHAKKFTKQTDSPASVAGDGFILSKTFLQN 73

Query: 167 KIYCNPP 147
            I   PP
Sbjct: 74  AIAHQPP 80


>AC006670-4|AAU20843.1|  518|Caenorhabditis elegans Hypothetical
           protein K07A3.3b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 341 ARGRPGHRTRTQPAAEGRQRTNRSEADKRDI-AGKF**-CDSKAKVVSSNFL*PPRLIQN 168
           A   P  +TR    A   Q+  R  +D+R I A KF    DS A V    F+     +QN
Sbjct: 14  ASANPSIQTRCISIARIDQKIKRGNSDRRVIHAKKFTKQTDSPASVAGDGFILSKTFLQN 73

Query: 167 KIYCNPP 147
            I   PP
Sbjct: 74  AIAHQPP 80


>AB182367-3|BAD23998.1|  331|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -3

Query: 460 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 281
           EF +   ++  SRA  LAE AE+ L A  ++  + TE + +  +     E     K++  
Sbjct: 87  EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 145

Query: 280 LTEARQIRE 254
             E  Q+++
Sbjct: 146 KREYEQLQK 154


>AB182367-2|BAD23997.1|  393|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -3

Query: 460 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 281
           EF +   ++  SRA  LAE AE+ L A  ++  + TE + +  +     E     K++  
Sbjct: 149 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 207

Query: 280 LTEARQIRE 254
             E  Q+++
Sbjct: 208 KREYEQLQK 216


>AB182367-1|BAD23996.1|  404|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -3

Query: 460 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 281
           EF +   ++  SRA  LAE AE+ L A  ++  + TE + +  +     E     K++  
Sbjct: 160 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 218

Query: 280 LTEARQIRE 254
             E  Q+++
Sbjct: 219 KREYEQLQK 227


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -3

Query: 376  RESAREATEVVKHVADLATGLELSQQPKVDSALTEARQIRETSPVSSDD 230
            RES  E+ + VKH  +  T   +++Q   D    EA +IR  SPV++++
Sbjct: 3601 RESPVESEKSVKHTTETTTTTTVTRQLYDD----EASEIRGESPVATEE 3645


>U40948-1|AAA81727.1|  730|Caenorhabditis elegans Gliotactin
           (drosophila neuroligin-like) homolog protein 1 protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 760 FYHGSNFLLGSANEFSRS*QTGQGGLVL 677
           F+HG NF  GSANE+       +G +V+
Sbjct: 195 FFHGGNFQTGSANEWPAHGLASRGMVVV 222


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -3

Query: 376  RESAREATEVVKHVADLATGLELSQQPKVDSALTEARQIRETSPVSSDD 230
            RES  E+ + VKH  +  T   +++Q   D    EA +IR  SPV++++
Sbjct: 3601 RESPVESEKSVKHTTETTTTTTVTRQLYDD----EASEIRGESPVATEE 3645


>U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t protein
           3, isoform c protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -2

Query: 455 CGD*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTN 276
           CG+ QR T + R  T    G+D   G        R R+ R R   RT  +   E  QR +
Sbjct: 210 CGNSQRNTKRIRSSTKRAEGQD--KGASSENMQTRDREVRSRETSRT-ARVRHERAQRAS 266

Query: 275 RS 270
            S
Sbjct: 267 TS 268


>U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical
           protein B0495.8a protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -2

Query: 443 QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAE-GRQRTNRSE 267
           QR+ +  RR+  G RGE     +G+R    R R+ R R   R R+    + G +R +R  
Sbjct: 251 QRRESYGRRDRGGDRGE----YRGDR---DRDRRNRDRSRSRDRSYRRDDRGDRRYDRDN 303

Query: 266 ADKRD 252
            D+RD
Sbjct: 304 RDRRD 308


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/59 (30%), Positives = 22/59 (37%)
 Frame = -2

Query: 464 GGICGD*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGR 288
           GG  G   R  ++S     GR G     G G R+G    R   G  GH    +    GR
Sbjct: 233 GGRRGHGGRHGSRSG-SPGGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGRHGGHGR 290


>AF067608-15|AAO38679.1|  470|Caenorhabditis elegans Hypothetical
           protein B0511.14b protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/79 (25%), Positives = 34/79 (43%)
 Frame = -3

Query: 442 SDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSALTEARQ 263
           SD  I +  K  E  +     +RE  R   ++ + V +     E    P   SAL  + +
Sbjct: 321 SDPTIRKKGKTDEQLDHYHEKIREKYRNIQKIQEGVEEEDEDEEDDDMPSTSSALPSSSR 380

Query: 262 IRETSPVSSDDATLKRKSY 206
            R++   SS  AT +++ Y
Sbjct: 381 -RQSRRRSSTGATNRKRKY 398


>AF067608-14|AAK95864.1|  551|Caenorhabditis elegans Hypothetical
           protein B0511.14a protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/79 (25%), Positives = 34/79 (43%)
 Frame = -3

Query: 442 SDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSALTEARQ 263
           SD  I +  K  E  +     +RE  R   ++ + V +     E    P   SAL  + +
Sbjct: 321 SDPTIRKKGKTDEQLDHYHEKIREKYRNIQKIQEGVEEEDEDEEDDDMPSTSSALPSSSR 380

Query: 262 IRETSPVSSDDATLKRKSY 206
            R++   SS  AT +++ Y
Sbjct: 381 -RQSRRRSSTGATNRKRKY 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,948,704
Number of Sequences: 27780
Number of extensions: 304679
Number of successful extensions: 1076
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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