Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1369
(834 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 32 0.44
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 32 0.44
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 32 0.44
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 32 0.44
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 31 1.0
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 31 1.0
AF043704-2|AAX88816.1| 407|Caenorhabditis elegans Prion-like-(q... 31 1.0
Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical p... 31 1.3
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 31 1.3
U58761-7|AAB00717.1| 481|Caenorhabditis elegans Hypothetical pr... 30 1.8
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 30 1.8
Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical pr... 29 3.1
U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin pro... 29 3.1
U13072-6|AAK31399.1| 327|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF016672-6|AAM34394.2| 165|Caenorhabditis elegans Vig (drosophi... 29 3.1
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophi... 29 4.1
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 5.4
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 5.4
AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical ... 29 5.4
AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical ... 29 5.4
AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical ... 29 5.4
AC090999-6|AAK26143.2| 214|Caenorhabditis elegans Hypothetical ... 29 5.4
AC006670-5|AAF39912.2| 356|Caenorhabditis elegans Hypothetical ... 29 5.4
AC006670-4|AAU20843.1| 518|Caenorhabditis elegans Hypothetical ... 29 5.4
AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical ... 29 5.4
AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical ... 29 5.4
AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical ... 29 5.4
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 9.5
U40948-1|AAA81727.1| 730|Caenorhabditis elegans Gliotactin (dro... 28 9.5
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 9.5
U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t prot... 28 9.5
U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical pr... 28 9.5
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 9.5
AF067608-15|AAO38679.1| 470|Caenorhabditis elegans Hypothetical... 28 9.5
AF067608-14|AAK95864.1| 551|Caenorhabditis elegans Hypothetical... 28 9.5
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = -2
Query: 449 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 270
D R+ + R+ + RR S +R+ H+ + GR HR+R++ ++ R R NRS
Sbjct: 599 DEDRERKRHRKRSRSRR-RSRSCSPRDRSREHKKSRKSGRH-HRSRSRSSSRDRHRRNRS 656
Query: 269 EADKR 255
+ R
Sbjct: 657 RSRDR 661
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = -2
Query: 449 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 270
D R+ + R+ + RR S +R+ H+ + GR HR+R++ ++ R R NRS
Sbjct: 685 DEDRERKRHRKRSRSRR-RSRSCSPRDRSREHKKSRKSGRH-HRSRSRSSSRDRHRRNRS 742
Query: 269 EADKR 255
+ R
Sbjct: 743 RSRDR 747
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = -2
Query: 449 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 270
D R+ + R+ + RR S +R+ H+ + GR HR+R++ ++ R R NRS
Sbjct: 687 DEDRERKRHRKRSRSRR-RSRSCSPRDRSREHKKSRKSGRH-HRSRSRSSSRDRHRRNRS 744
Query: 269 EADKR 255
+ R
Sbjct: 745 RSRDR 749
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = -2
Query: 449 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 270
D R+ + R+ + RR S +R+ H+ + GR HR+R++ ++ R R NRS
Sbjct: 685 DEDRERKRHRKRSRSRR-RSRSCSPRDRSREHKKSRKSGRH-HRSRSRSSSRDRHRRNRS 742
Query: 269 EADKR 255
+ R
Sbjct: 743 RSRDR 747
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = -2
Query: 422 RRETSGRRGEDISSGQGERAGGH-RSRQARGRPGHRTRTQPAAEGRQRT-NRSEADKRDI 249
RR S RR + R+ RSR++R R R+R+ P E R+R+ +RS + KRD+
Sbjct: 89 RRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRS-PVRESRRRSESRSPSPKRDL 147
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = -2
Query: 422 RRETSGRRGEDISSGQGERAGGH-RSRQARGRPGHRTRTQPAAEGRQRT-NRSEADKRDI 249
RR S RR + R+ RSR++R R R+R+ P E R+R+ +RS + KRD+
Sbjct: 89 RRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRS-PVRESRRRSESRSPSPKRDL 147
>AF043704-2|AAX88816.1| 407|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 72
protein.
Length = 407
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 386 SSGQGERAGGHRSRQARGRPGHRTRTQPAA 297
SS + R+ HR R R RPGHR R P A
Sbjct: 143 SSPEPPRSSTHRQRIHRIRPGHRIRPSPPA 172
>Z99771-2|CAB16920.1| 1130|Caenorhabditis elegans Hypothetical
protein F54D5.14 protein.
Length = 1130
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/86 (20%), Positives = 43/86 (50%)
Frame = -3
Query: 469 MQAEFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKV 290
++AE A T ++ Q+ + E+ ++ + + + E +++K+VAD+ + Q +
Sbjct: 729 LRAELAQTANEDQVENLNESIEEMQKKIPLIED---EVKDILKNVADITADMAPVIQERK 785
Query: 289 DSALTEARQIRETSPVSSDDATLKRK 212
++ T A +ET +S L+ +
Sbjct: 786 EAEHTLAEIQKETRDFASKSQKLQNE 811
>Z66513-16|CAA91339.1| 1130|Caenorhabditis elegans Hypothetical
protein F54D5.14 protein.
Length = 1130
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/86 (20%), Positives = 43/86 (50%)
Frame = -3
Query: 469 MQAEFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKV 290
++AE A T ++ Q+ + E+ ++ + + + E +++K+VAD+ + Q +
Sbjct: 729 LRAELAQTANEDQVENLNESIEEMQKKIPLIED---EVKDILKNVADITADMAPVIQERK 785
Query: 289 DSALTEARQIRETSPVSSDDATLKRK 212
++ T A +ET +S L+ +
Sbjct: 786 EAEHTLAEIQKETRDFASKSQKLQNE 811
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = -2
Query: 440 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEAD 261
R + RRE SG R S +R GG R ++R R R R R + +E D
Sbjct: 93 RDRRRDRRERSGSRDRRRRSRSRDRDGGRRRDRSRSR-DRRDRNDDRKRDRNEDSDNEED 151
Query: 260 KRDIA 246
+A
Sbjct: 152 VSKMA 156
>U58761-7|AAB00717.1| 481|Caenorhabditis elegans Hypothetical
protein C01F1.1 protein.
Length = 481
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -2
Query: 392 DISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADKRDIA 246
D S G E GG ++A+ + + +PA E RQR DK D+A
Sbjct: 218 DDSDGDDEGEGGDDGKKAKNKKKKKKNAKPAKEKRQRVE----DKDDVA 262
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = -2
Query: 422 RRETSGRRGEDISSGQGERAGGH-RSRQARGRPGHRTRTQPAAEGRQRT-NRSEADKRD 252
RR S RR + R+ RSR++R R R+R+ P E R+R+ +RS + KRD
Sbjct: 89 RRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRSSSRSRS-PVRESRRRSESRSPSPKRD 146
>Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical protein
F33A8.1 protein.
Length = 897
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = -2
Query: 452 GD*QRQTNKSRR----ETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQ 285
GD ++ +K RR + R+G + GER G R R+ R + R +
Sbjct: 796 GDDRKDRSKDRRRQDSDDEDRKGRERREDSGERRRGDRDRRDRNKDQEDHREDRRDRSKD 855
Query: 284 RTNRSEADKRD 252
R +R + + D
Sbjct: 856 REDRRDRRRHD 866
>U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin protein.
Length = 897
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = -2
Query: 452 GD*QRQTNKSRR----ETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQ 285
GD ++ +K RR + R+G + GER G R R+ R + R +
Sbjct: 796 GDDRKDRSKDRRRQDSDDEDRKGRERREDSGERRRGDRDRRDRNKDQEDHREDRRDRSKD 855
Query: 284 RTNRSEADKRD 252
R +R + + D
Sbjct: 856 REDRRDRRRHD 866
>U13072-6|AAK31399.1| 327|Caenorhabditis elegans Hypothetical
protein C07D10.1 protein.
Length = 327
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -3
Query: 721 EFSRS*QTGQGGLVLHDATPQLHIQSNRTASSKSRAIETVDIGEVTSSIKTLETSAKNLL 542
+F S ++GQ ++ D + + N+T S K + IE +I +VT S T+ S + L
Sbjct: 186 DFVGSSESGQSSGLVFDDNAVIQLMKNQTGSRKIQKIELFNI-KVTVSRHTMIESLRKLA 244
Query: 541 R 539
R
Sbjct: 245 R 245
>AF016672-6|AAM34394.2| 165|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform b
protein.
Length = 165
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 401 RGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEG 291
RGE +S+ G+R G R R G R +PA G
Sbjct: 27 RGERVSNENGDRPQGENRRGGPRRGGERGAARPAGRG 63
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -2
Query: 419 RETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADKR 255
R + GRR S G S+++R R RTR+ + R R+ + +R
Sbjct: 106 RGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSSSRSRSGSRRSSRR 160
>AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform a
protein.
Length = 378
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = -2
Query: 404 RRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQ----RTNR-SEADKRDIA 246
R GE +S+ G+R G R R G R +PA G + R NR E K++++
Sbjct: 86 RDGERVSNENGDRPQGENRRGGPRRGGERGAARPAGRGGRGGFTRENREGEEPKQEVS 143
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = -2
Query: 449 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 270
D R ++ R++ ++ + R+ RSR R R R R + + +R +RS
Sbjct: 67 DRSRSRDRDRKKDRKKKDRSRERDRERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRS 126
Query: 269 EADKR 255
D+R
Sbjct: 127 GGDRR 131
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = -2
Query: 449 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 270
D R ++ R++ ++ + R+ RSR R R R R + + +R +RS
Sbjct: 67 DRSRSRDRDRKKDRKKKDRSRERDRERRSSRSRSRSPRDRDRERRRRRSRSPPPRRRSRS 126
Query: 269 EADKR 255
D+R
Sbjct: 127 GGDRR 131
>AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical
protein C04C3.5a protein.
Length = 331
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -3
Query: 460 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 281
EF + ++ SRA LAE AE+ L A ++ + TE + + + E K++
Sbjct: 87 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 145
Query: 280 LTEARQIRE 254
E Q+++
Sbjct: 146 KREYEQLQK 154
>AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical
protein C04C3.5c protein.
Length = 393
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -3
Query: 460 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 281
EF + ++ SRA LAE AE+ L A ++ + TE + + + E K++
Sbjct: 149 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 207
Query: 280 LTEARQIRE 254
E Q+++
Sbjct: 208 KREYEQLQK 216
>AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical
protein C04C3.5b protein.
Length = 404
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -3
Query: 460 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 281
EF + ++ SRA LAE AE+ L A ++ + TE + + + E K++
Sbjct: 160 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 218
Query: 280 LTEARQIRE 254
E Q+++
Sbjct: 219 KREYEQLQK 227
>AC090999-6|AAK26143.2| 214|Caenorhabditis elegans Hypothetical
protein Y82E9BR.11 protein.
Length = 214
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = -3
Query: 682 VLHDATPQLHIQSNRTASSKSRAIETVDIGEVTSSIKTLETSAKNLLRSVSLLNIYTYFF 503
V+HDA Q H++ + +++ + V + E+ +T+E+SAK LL + + Y
Sbjct: 69 VVHDAD-QKHVREYGNLAKETKILLEVALNELYE--ETMESSAKMLLEELKCARLVFYSL 125
Query: 502 FKLCI 488
++ CI
Sbjct: 126 YR-CI 129
>AC006670-5|AAF39912.2| 356|Caenorhabditis elegans Hypothetical
protein K07A3.3a protein.
Length = 356
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -2
Query: 341 ARGRPGHRTRTQPAAEGRQRTNRSEADKRDI-AGKF**-CDSKAKVVSSNFL*PPRLIQN 168
A P +TR A Q+ R +D+R I A KF DS A V F+ +QN
Sbjct: 14 ASANPSIQTRCISIARIDQKIKRGNSDRRVIHAKKFTKQTDSPASVAGDGFILSKTFLQN 73
Query: 167 KIYCNPP 147
I PP
Sbjct: 74 AIAHQPP 80
>AC006670-4|AAU20843.1| 518|Caenorhabditis elegans Hypothetical
protein K07A3.3b protein.
Length = 518
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -2
Query: 341 ARGRPGHRTRTQPAAEGRQRTNRSEADKRDI-AGKF**-CDSKAKVVSSNFL*PPRLIQN 168
A P +TR A Q+ R +D+R I A KF DS A V F+ +QN
Sbjct: 14 ASANPSIQTRCISIARIDQKIKRGNSDRRVIHAKKFTKQTDSPASVAGDGFILSKTFLQN 73
Query: 167 KIYCNPP 147
I PP
Sbjct: 74 AIAHQPP 80
>AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical
protein protein.
Length = 331
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -3
Query: 460 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 281
EF + ++ SRA LAE AE+ L A ++ + TE + + + E K++
Sbjct: 87 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 145
Query: 280 LTEARQIRE 254
E Q+++
Sbjct: 146 KREYEQLQK 154
>AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical
protein protein.
Length = 393
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -3
Query: 460 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 281
EF + ++ SRA LAE AE+ L A ++ + TE + + + E K++
Sbjct: 149 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 207
Query: 280 LTEARQIRE 254
E Q+++
Sbjct: 208 KREYEQLQK 216
>AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical
protein protein.
Length = 404
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -3
Query: 460 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 281
EF + ++ SRA LAE AE+ L A ++ + TE + + + E K++
Sbjct: 160 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 218
Query: 280 LTEARQIRE 254
E Q+++
Sbjct: 219 KREYEQLQK 227
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -3
Query: 376 RESAREATEVVKHVADLATGLELSQQPKVDSALTEARQIRETSPVSSDD 230
RES E+ + VKH + T +++Q D EA +IR SPV++++
Sbjct: 3601 RESPVESEKSVKHTTETTTTTTVTRQLYDD----EASEIRGESPVATEE 3645
>U40948-1|AAA81727.1| 730|Caenorhabditis elegans Gliotactin
(drosophila neuroligin-like) homolog protein 1 protein.
Length = 730
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 760 FYHGSNFLLGSANEFSRS*QTGQGGLVL 677
F+HG NF GSANE+ +G +V+
Sbjct: 195 FFHGGNFQTGSANEWPAHGLASRGMVVV 222
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -3
Query: 376 RESAREATEVVKHVADLATGLELSQQPKVDSALTEARQIRETSPVSSDD 230
RES E+ + VKH + T +++Q D EA +IR SPV++++
Sbjct: 3601 RESPVESEKSVKHTTETTTTTTVTRQLYDD----EASEIRGESPVATEE 3645
>U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t protein
3, isoform c protein.
Length = 279
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -2
Query: 455 CGD*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTN 276
CG+ QR T + R T G+D G R R+ R R RT + E QR +
Sbjct: 210 CGNSQRNTKRIRSSTKRAEGQD--KGASSENMQTRDREVRSRETSRT-ARVRHERAQRAS 266
Query: 275 RS 270
S
Sbjct: 267 TS 268
>U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical
protein B0495.8a protein.
Length = 313
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -2
Query: 443 QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAE-GRQRTNRSE 267
QR+ + RR+ G RGE +G+R R R+ R R R R+ + G +R +R
Sbjct: 251 QRRESYGRRDRGGDRGE----YRGDR---DRDRRNRDRSRSRDRSYRRDDRGDRRYDRDN 303
Query: 266 ADKRD 252
D+RD
Sbjct: 304 RDRRD 308
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = -2
Query: 464 GGICGD*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGR 288
GG G R ++S GR G G G R+G R G GH + GR
Sbjct: 233 GGRRGHGGRHGSRSG-SPGGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGRHGGHGR 290
>AF067608-15|AAO38679.1| 470|Caenorhabditis elegans Hypothetical
protein B0511.14b protein.
Length = 470
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = -3
Query: 442 SDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSALTEARQ 263
SD I + K E + +RE R ++ + V + E P SAL + +
Sbjct: 321 SDPTIRKKGKTDEQLDHYHEKIREKYRNIQKIQEGVEEEDEDEEDDDMPSTSSALPSSSR 380
Query: 262 IRETSPVSSDDATLKRKSY 206
R++ SS AT +++ Y
Sbjct: 381 -RQSRRRSSTGATNRKRKY 398
>AF067608-14|AAK95864.1| 551|Caenorhabditis elegans Hypothetical
protein B0511.14a protein.
Length = 551
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = -3
Query: 442 SDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSALTEARQ 263
SD I + K E + +RE R ++ + V + E P SAL + +
Sbjct: 321 SDPTIRKKGKTDEQLDHYHEKIREKYRNIQKIQEGVEEEDEDEEDDDMPSTSSALPSSSR 380
Query: 262 IRETSPVSSDDATLKRKSY 206
R++ SS AT +++ Y
Sbjct: 381 -RQSRRRSSTGATNRKRKY 398
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,948,704
Number of Sequences: 27780
Number of extensions: 304679
Number of successful extensions: 1076
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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