Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1369
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.6  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   8.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.0  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   8.0  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 138 NFFWRITINFVLYQPR 185
           N  WRIT NF  + PR
Sbjct: 207 NDSWRITHNFFYFDPR 222


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 310 LSQQPKVDSALTEARQIRETSP 245
           L +QP  +  L E R ++ET P
Sbjct: 157 LGEQPLTEQNLEELRDLKETYP 178


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 310 LSQQPKVDSALTEARQIRETSP 245
           L +QP  +  L E R ++ET P
Sbjct: 195 LGEQPLTEQNLEELRDLKETYP 216


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 383 SGQGERAGGHRSRQARGRPGHRTRT 309
           +G+G +  GH    +RGR G+R RT
Sbjct: 78  TGRG-KGRGHGKGGSRGRGGNRGRT 101


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 601 RRSQLRDFWTKQFG 642
           R++  +D W K+FG
Sbjct: 82  RKTSFKDLWDKRFG 95


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 585 HRLSRPWKPVLRTYSDR*VYLI 520
           H    PW P+LR   D  +Y I
Sbjct: 540 HTWIHPWLPLLRNRLDTLIYPI 561


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 601 RRSQLRDFWTKQFG 642
           R++  +D W K+FG
Sbjct: 82  RKTSFKDLWDKRFG 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,246
Number of Sequences: 438
Number of extensions: 3797
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)