Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1369
(834 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64670.1 68418.m08127 ribosomal protein L15 family protein 32 0.41
At1g61170.1 68414.m06893 expressed protein 32 0.54
At1g16770.1 68414.m02015 hypothetical protein 31 0.94
At4g37860.1 68417.m05355 hypothetical protein 30 2.2
At3g58120.1 68416.m06481 bZIP transcription factor family protei... 30 2.2
At3g61690.1 68416.m06913 expressed protein 29 3.8
At3g25920.1 68416.m03231 50S ribosomal protein L15, chloroplast ... 29 3.8
At4g17520.1 68417.m02621 nuclear RNA-binding protein, putative s... 29 5.0
At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) s... 29 5.0
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 28 8.8
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 28 8.8
At2g42450.1 68415.m05252 lipase class 3 family protein similar t... 28 8.8
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 28 8.8
>At5g64670.1 68418.m08127 ribosomal protein L15 family protein
Length = 281
Score = 32.3 bits (70), Expect = 0.41
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -2
Query: 419 RETSGRRGEDISSGQGERAG-GHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADKRDIAG 243
R+ R+G I SG+G+ AG GH+ ++ARG + EG Q R KR
Sbjct: 75 RKLKTRKGRGIGSGKGKTAGRGHKGQKARG------TMKFGFEGGQTPLRRRLPKRGFKN 128
Query: 242 KF 237
KF
Sbjct: 129 KF 130
>At1g61170.1 68414.m06893 expressed protein
Length = 251
Score = 31.9 bits (69), Expect = 0.54
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = -2
Query: 470 YAGGICGD*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEG 291
Y G+ +R +SR + R D S Q R GG ++R+ PG R R PA G
Sbjct: 165 YGSGVRDPGERSGRRSRSPATNRSVMD--SNQSSRVGGAKTRKNNQSPG-RVRLDPAKNG 221
>At1g16770.1 68414.m02015 hypothetical protein
Length = 324
Score = 31.1 bits (67), Expect = 0.94
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 443 QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGH 321
+ T + + SG+ G D SG GE +G + +G GH
Sbjct: 55 ENPTEEKQDPLSGKEGSDKDSGDGEASGSSSGAKNQGEGGH 95
>At4g37860.1 68417.m05355 hypothetical protein
Length = 354
Score = 29.9 bits (64), Expect = 2.2
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 4/138 (2%)
Frame = -3
Query: 610 ETVDIGEVTSSIKTL---ETSAKNLLRSV-SLLNIYTYFFFKLCI*ISF*CMQAEFAATD 443
+TV V K L ETSA +L S+ ++ I ++FF L + + + + T
Sbjct: 54 QTVIASRVLQESKPLLENETSAAKMLNSIQNVCLIRSFFFTFLTLQKKSSVLMNDASGTK 113
Query: 442 SDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSALTEARQ 263
+ ++ R A+ +D + A+ + + + E QP+ S+
Sbjct: 114 NANEVKRKAEKLKDGRDYSFLFSDDAQLPVSIKEPPTSRPSSTESQMQPRPGSSNNVQAH 173
Query: 262 IRETSPVSSDDATLKRKS 209
RE S ++S KRKS
Sbjct: 174 TREDSAINSQ----KRKS 187
>At3g58120.1 68416.m06481 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription factor
;supported by cDNA gi|15100054|gb|AF401300.1|AF401300
Length = 329
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 697 GQGGLVLHDATPQLHIQSNRTASSKSRAIETVDIGEVTSSIKTLETSAKNLLRSVSLLN 521
G G +HD I +NR ++ +SR + I E+ S+ +L+T L V+ L+
Sbjct: 194 GSSGNRIHDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPRVAFLD 252
>At3g61690.1 68416.m06913 expressed protein
Length = 1303
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -2
Query: 428 KSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADKRDI 249
+ +R TSG R + +R H R+ G +TR GR NR++AD + I
Sbjct: 1116 REQRPTSGMRRGNYGH---DRTDHHSDREGNWNAGSKTR----GSGRNHNNRNQADNKPI 1168
Query: 248 A 246
+
Sbjct: 1169 S 1169
>At3g25920.1 68416.m03231 50S ribosomal protein L15, chloroplast
(CL15) identical to GB:P25873 from [Arabidopsis
thaliana]
Length = 277
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 419 RETSGRRGEDISSGQGERAG-GHRSRQARGRPG 324
R+ R+G IS+GQG G G R +++R PG
Sbjct: 93 RKKQKRKGRGISAGQGASCGFGMRGQKSRSGPG 125
>At4g17520.1 68417.m02621 nuclear RNA-binding protein, putative
similar to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 360
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -2
Query: 428 KSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADKRDI 249
+S RRG + +G+R G + + G G R + + RT DKRD
Sbjct: 100 RSEEGDGARRGGPVGGYRGDRRGSYSNG---GDSGDSERPRKNYDRHSRTAYGNEDKRDG 156
Query: 248 AGK 240
AG+
Sbjct: 157 AGR 159
>At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) strong
similarity to dynamin-like protein 6 (ADL6) [Arabidopsis
thaliana] GI:6651399; contains Pfam profiles PF01031:
Dynamin central region, PF00350: Dynamin family, PF02212:
Dynamin GTPase effector domain, PF00169: PH domain;
identical to cDNA dynamin-like protein ADL3, GI:4803835
Length = 920
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -2
Query: 434 TNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTR-TQPAAEGRQRTNRSEADK 258
T S R G GED + A G S + G GH R + PA G + + +
Sbjct: 841 TESSPRTNGGSSGEDWMNAFNAAASGPDSLKRYGSGGHSRRYSDPAQNGEDSSGSGGSSR 900
Query: 257 R 255
R
Sbjct: 901 R 901
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9 (SP:Q9NSI6)
{Homo sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (4 copies)
Length = 1677
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = -2
Query: 449 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 270
D Q +S+R+ ++ I + G R + G P ++ RT+ + GR+ + R
Sbjct: 826 DHQNSLRRSKRKKH-KKEAGIMTSSGRRVKKRNFDELEGAPSNKKRTRKSRSGRKESKRK 884
Query: 269 EADKR 255
+ +
Sbjct: 885 SSKSK 889
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -3
Query: 433 QISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 281
+I R K A+DA A + ATE +K VA+ L+ P+V +
Sbjct: 828 EIERFQKAAKDASELAARQSSKHKAATEALKSVAEQLKELKEKLPPEVSES 878
>At2g42450.1 68415.m05252 lipase class 3 family protein similar to
calmodulin-binding heat-shock protein CaMBP [Nicotiana
tabacum] GI:1087073; contains Pfam profile PF01764:
Lipase, PF03893: Lipase 3 N-terminal region
Length = 546
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 570 VLIDDVTSPISTVSIARLLDEAVRFDW 650
V+ DD+ +S S+ARL +E ++ DW
Sbjct: 366 VMQDDIIPRLSAASLARLRNEILQTDW 392
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 440 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRP 327
R + R + G RG D G+ GG S + RGRP
Sbjct: 506 RDGGRGRFGSGGGRGRDGGRGRFGSGGGRGSDRGRGRP 543
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,057,169
Number of Sequences: 28952
Number of extensions: 285110
Number of successful extensions: 967
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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