Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1367
         (817 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9EN26 Cluster: AMV022; n=1; Amsacta moorei entomopoxvi...    36   1.2  
UniRef50_Q9N5A3 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  
UniRef50_Q25804 Cluster: Rps4 protein; n=2; Plasmodium|Rep: Rps4...    33   8.6  

>UniRef50_Q9EN26 Cluster: AMV022; n=1; Amsacta moorei entomopoxvirus
           'L'|Rep: AMV022 - Amsacta moorei entomopoxvirus (AmEPV)
          Length = 192

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 25/103 (24%), Positives = 45/103 (43%)
 Frame = -3

Query: 698 FLAYINVNNINRCSYCYNNYSL*RHCNKVQGCKLCNSSMLRLKRIAALFGNYFNDHSYLV 519
           F+  +   NI +CS    N    + CN +   K CN+    +K    L+  + N HSY  
Sbjct: 15  FIDNLKFKNIKKCSAIVYN----KQCNNITKYKYCNAHYNIMKEYCKLYHYWDNQHSYPS 70

Query: 518 LILEFFKLAI*TIQLEAISRYVGKFHCYY*TLVDIQYCEDDWL 390
           + L    + +  +++E  ++Y+  F+      +   Y  D WL
Sbjct: 71  VSL----IDLIEVEIEMRNKYIYNFN------IISDYAHDKWL 103


>UniRef50_Q9N5A3 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 398

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +2

Query: 425 MSSNNSEIFQHTC*LPPAVLFKWPI*KIQVLILSKNDH*NNYQIRLLCASILTLSYYII 601
           +S +N E F +T   PP  LF      + +L+L  ND  +   I L C ++  +S+ I+
Sbjct: 15  LSGSNLEAFLYTVLFPPICLFGVVGNALTILVLVNNDFMSRANIFLTCLAVCDVSFLIL 73


>UniRef50_Q25804 Cluster: Rps4 protein; n=2; Plasmodium|Rep: Rps4
           protein - Plasmodium falciparum
          Length = 208

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 113 IL*FMRDIKPYILTKITYAYETYIQICCAYQLNNVCLFLTNKYRLV 250
           IL F   IK  IL  + Y Y  YI I   Y+ N + ++  NKY ++
Sbjct: 134 ILFFNNKIKYIILKNLIYKYNIYIYISNLYKYNFIKIYSYNKYFII 179


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 714,327,015
Number of Sequences: 1657284
Number of extensions: 13156694
Number of successful extensions: 29249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29245
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)