Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1367
         (817 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.9  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    22   5.1  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   8.9  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   8.9  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 499 NWPFKQYSWRQLAGMLENFTVITRHWW 419
           +WPF   S     G +++ +V +  WW
Sbjct: 164 SWPFNTMSGATHHGGIKSDSVTSNAWW 190


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 328 HYNPKSLKNRNTFSLNF 278
           H++P +L N+N    N+
Sbjct: 48  HFHPLALSNKNAIDFNY 64


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 443 HCYY*TLVDIQYCEDDWLEDYLI 375
           H YY  L  I +   D+L+++LI
Sbjct: 66  HTYYRRLYTITHLVLDYLDEFLI 88


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 443 HCYY*TLVDIQYCEDDWLEDYLI 375
           H YY  L  I +   D+L+++LI
Sbjct: 66  HTYYRRLYTITHLVLDYLDEFLI 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,732
Number of Sequences: 336
Number of extensions: 4283
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)