Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1367
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   3.2  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    26   5.6  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   7.4  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.4  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   7.4  
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po...    25   9.7  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -1

Query: 148 NVWLYIPHKLQNKVFY*GKLLMRRLTTY*AINYMVPKKI 32
           N W+Y+ +  + + F+  +++ R  +T   I+ + PKK+
Sbjct: 496 NFWVYLQNVFREEKFFMVRIVFRACSTVCLIDKLPPKKV 534


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
 Frame = -1

Query: 496 WPFKQYSWRQLAGMLENF---TVITRHW-----WIYNTVRMIGLKIT 380
           WPF    W +     ENF   T++   W     WI   V M+GLK+T
Sbjct: 586 WPFSTLGWPKDTSDYENFYPTTLMETGWDILFFWIARMV-MLGLKLT 631


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 568 RFNLNIELLHNLHPCTLLQ 624
           RFNL  +LLH+L+P  +L+
Sbjct: 834 RFNLTDDLLHSLNPICILR 852


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 384 LLDRHNITKKINFCSMLNYIIILKALK 304
           LLD+++ T  I+   +LN+ ++LK LK
Sbjct: 136 LLDKNSTTLDISSGILLNFTVVLKQLK 162


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -3

Query: 623 CNKVQGCKLCNSSMLRLKRIAALFGNYFNDHSYLVLILEFFKLAI*TI 480
           C++   C  CN  +LR+      F N     ++    LE F L + +I
Sbjct: 107 CDRSHHCSQCNKCILRMDHHCMWFKNCVGFRNHKFFFLECFYLNLYSI 154


>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 795 IQNIERYSHIHRVAFLNTHWCLCGIINSEACNIP 694
           + NIE Y H+++    N+H C   + N+  C  P
Sbjct: 76  VVNIEAYGHVYKQTLWNSH-C---VENTPGCEFP 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,656
Number of Sequences: 5004
Number of extensions: 61692
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)