Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1367
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_20672| Best HMM Match : PHD (HMM E-Value=0.088)                     29   3.4  
SB_50382| Best HMM Match : RVT_1 (HMM E-Value=0.026)                   29   3.4  
SB_50112| Best HMM Match : PHD (HMM E-Value=0.0011)                    29   3.4  
SB_6775| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_16336| Best HMM Match : 7tm_1 (HMM E-Value=5.9e-18)                 29   6.0  
SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)                       28   7.9  

>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1360

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 349 LLFNVKLHYNPKSLKNRNTFSLNFMI 272
           +LFN KLHY+P      N F LN ++
Sbjct: 45  ILFNQKLHYSPNLTSGINGFGLNCIL 70


>SB_20672| Best HMM Match : PHD (HMM E-Value=0.088)
          Length = 142

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 349 LLFNVKLHYNPKSLKNRNTFSLNFMI 272
           +LFN KLHY+P      N F LN ++
Sbjct: 16  ILFNQKLHYSPNLTSGINGFGLNCIL 41


>SB_50382| Best HMM Match : RVT_1 (HMM E-Value=0.026)
          Length = 1036

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 349 LLFNVKLHYNPKSLKNRNTFSLNFMI 272
           +LFN KLHY+P      N F LN ++
Sbjct: 450 ILFNQKLHYSPNLTSGINGFGLNCIL 475


>SB_50112| Best HMM Match : PHD (HMM E-Value=0.0011)
          Length = 357

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 349 LLFNVKLHYNPKSLKNRNTFSLNFMI 272
           +LFN KLHY+P      N F LN ++
Sbjct: 30  ILFNQKLHYSPNLTSGINGFGLNCIL 55


>SB_6775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 349 LLFNVKLHYNPKSLKNRNTFSLNFMI 272
           +LFN KLHY+P      N F LN ++
Sbjct: 30  ILFNQKLHYSPNLTSGINGFGLNCIL 55


>SB_16336| Best HMM Match : 7tm_1 (HMM E-Value=5.9e-18)
          Length = 344

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 231 VKNKHTLFN*YAQQICMYVSYAYVIFVKMYGFIS 130
           +K KH+LF      IC++  Y   +FV + G +S
Sbjct: 217 IKYKHSLFTMLLVVICLFCCYLPFVFVHIVGSVS 250


>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
          Length = 521

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 366 YYADQVIFKPIILTVLYIHQCLVITVKFSN 455
           +Y D+++ + + LT++ IH CL +TV  S+
Sbjct: 177 FYIDELVHRAVHLTLI-IHMCLAVTVTRSD 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,159,471
Number of Sequences: 59808
Number of extensions: 411467
Number of successful extensions: 878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)