Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1367
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical ...    33   0.18 
AF101305-1|AAF98592.2|  179|Caenorhabditis elegans Hypothetical ...    28   7.0  
AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    28   7.0  

>AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical
           protein W10C4.1 protein.
          Length = 398

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +2

Query: 425 MSSNNSEIFQHTC*LPPAVLFKWPI*KIQVLILSKNDH*NNYQIRLLCASILTLSYYII 601
           +S +N E F +T   PP  LF      + +L+L  ND  +   I L C ++  +S+ I+
Sbjct: 15  LSGSNLEAFLYTVLFPPICLFGVVGNALTILVLVNNDFMSRANIFLTCLAVCDVSFLIL 73


>AF101305-1|AAF98592.2|  179|Caenorhabditis elegans Hypothetical
           protein C04F5.2 protein.
          Length = 179

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 143 YILTKITYAYETYIQICCAYQLNNVC 220
           Y++  + YA  T +  CC  +L NVC
Sbjct: 111 YLIYDLAYAATTALVFCCLIELPNVC 136


>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 236 YLLRINIHCLTDTHNKSVCMFHMHM*FL 153
           Y  R N HC+ D H ++ C F  +  FL
Sbjct: 58  YTCRHNGHCVVDRHERNSCRFFSNFLFL 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,151,476
Number of Sequences: 27780
Number of extensions: 340867
Number of successful extensions: 787
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)