Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1367
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   4.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   4.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   4.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   4.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.9  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   5.9  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   5.9  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 710 RLATFLAYINVNNINRCSYCYNNYSL*RHCNKV 612
           ++ + L+   ++N N   Y YNN +   +C K+
Sbjct: 80  KIISSLSNRTIHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 710 RLATFLAYINVNNINRCSYCYNNYSL*RHCNKV 612
           ++ + L+   ++N N   Y YNN +   +C K+
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 710 RLATFLAYINVNNINRCSYCYNNYSL*RHCNKV 612
           ++ + L+   ++N N   Y YNN +   +C K+
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 710 RLATFLAYINVNNINRCSYCYNNYSL*RHCNKV 612
           ++ + L+   ++N N   Y YNN +   +C K+
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKL 112


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 267 IFLNHSTNLYLFVKNKHTLFN*YAQQICMYVSY 169
           +FL H+TNL   + +    +    +Q+  Y++Y
Sbjct: 369 LFLGHATNLIQSLDSSRRQYREKVKQVEEYMAY 401


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 267 IFLNHSTNLYLFVKNKHTLFN*YAQQICMYVSY 169
           +FL H+TNL   + +    +    +Q+  Y++Y
Sbjct: 337 LFLGHATNLIQSLDSSRRQYREKVKQVEEYMAY 369


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 683 LYRPGMLQASLFIIPHRHQ 739
           L+ PG+++ASL  +  RH+
Sbjct: 100 LHDPGLMEASLIGLVERHK 118


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 683 LYRPGMLQASLFIIPHRHQ 739
           L+ PG+++ASL  +  RH+
Sbjct: 100 LHDPGLMEASLIGLVERHK 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,697
Number of Sequences: 438
Number of extensions: 4671
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)