Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1364
         (767 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.88 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    25   0.88 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   3.6  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 185 TDKEMSRKRPTALQ*RPTVSPLLREPGAT 271
           T  E   + P A +  P  SPL++EPG++
Sbjct: 78  TSPEPDPEIPVAPEPAPLASPLVQEPGSS 106


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
 Frame = +1

Query: 82  RPPGGGHTNIFDSEPE--PPRTGRRAVPPSAT------STFSHGQGDEPKATNGTSVATN 237
           R PGG H+     EPE    ++    VP S +      + FS GQ + P ++  +     
Sbjct: 16  RSPGGDHSENMQDEPENLSNKSNSITVPLSISTGQRLPANFSFGQVNSPPSSTSSGSLGQ 75

Query: 238 GQSTP 252
             +TP
Sbjct: 76  FPATP 80


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 159 TKRNEHFQPRTRR*AESDQRH 221
           T+RN +++PRT R     ++H
Sbjct: 227 TRRNPYYRPRTSRTEPPRRKH 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,180
Number of Sequences: 336
Number of extensions: 3051
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)