Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1364
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.14 
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    27   3.0  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   3.9  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   6.8  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   9.0  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    25   9.0  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +1

Query: 85  PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 252
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPP 347



 Score = 31.5 bits (68), Expect = 0.14
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +1

Query: 85  PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 252
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPP 401


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = -2

Query: 745 NLKRIALGESKIGRRAARVTEIFKLSWLNYERIQPILASLADNTTLIISKGKIGNTHCFE 566
           NLK     E+ I   A    +I  LSW    R   +L+S  D T  +    +     CFE
Sbjct: 291 NLKAPVFSEAPIREYAGHTADILDLSW---SRNNFLLSSSMDKTARLWHPVRKDCLCCFE 347

Query: 565 H 563
           H
Sbjct: 348 H 348


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 157 PPSATSTFSHGQGDEPKATNGTSVA-TNGQST 249
           PP++TS  S+G G  P+   G+S    NG  T
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQT 451


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 615 QH*SFQKAKSETHIVLSIFDHNCRILKGQPEAYLKKT*PRYI 490
           +H S +KA      +L    +N  ILK   E Y+K   PR I
Sbjct: 255 EHGSLKKAAEGFKFLLQSSPYNASILKNLAEIYIKIHAPREI 296


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 530 NRKRTSRKLSLDTYL*HNVS*MKIEDLIVQTHSQRVW 420
           NR++  +  SLDTY    +  MK   L++   SQ  W
Sbjct: 355 NRRKCIKLTSLDTYSLLVLEIMKHPSLLISAISQHFW 391


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 742 LKRIALGESKIGRRAARVTEIFKLSWLNYERIQPILASLADNTTLIISKGK 590
           L  + +  S++ RRA R   IF  + L+Y R+Q     ++     +++K K
Sbjct: 206 LTMLNIYNSRLTRRAVRKQTIFNHNLLDYRRLQANEKRMSKEERNLLNKTK 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,952
Number of Sequences: 5004
Number of extensions: 50646
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)