Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1364
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0519 - 34481751-34482722 32 0.44
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 31 1.0
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 30 1.8
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872 30 2.3
01_01_0219 + 1863478-1864041,1864459-1865109 29 3.1
07_03_1136 + 24218601-24218734,24218769-24219906 29 4.1
01_07_0046 - 40714701-40714763,40715266-40715343,40716398-407164... 29 4.1
10_08_0271 - 16382655-16384451 29 5.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 5.4
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 29 5.4
01_02_0108 - 11200964-11201338 29 5.4
03_01_0280 + 2152000-2153510,2153633-2153732 28 7.1
08_01_0252 + 2060214-2060587,2060710-2061166 28 9.4
05_04_0002 + 17031662-17032264 28 9.4
03_03_0142 + 14800317-14801240 28 9.4
>03_06_0519 - 34481751-34482722
Length = 323
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 74 GCSAPPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATDKEMSRK 208
G APP ++ T + RS R GA P H A+ S+T+ S +
Sbjct: 28 GAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTNARRSSR 72
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 127 EPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATN 237
+ P+ G A P A STF H Q P ATN +++ N
Sbjct: 586 QAPQAG--APYPQAASTFPHSQASHPAATNPSTIPQN 620
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 127 EPPRTGRRAVPPS--ATSTFSHGQGDEPKATNGTSVATNGQST 249
+ PR+G ++ S A ST +HGQ + G + +N QST
Sbjct: 410 QSPRSGGTSLNSSGFAASTVNHGQSSVVRTQGGNGIPSNNQST 452
>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
Length = 686
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 58 ARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSH 186
A L +R RPP GG T + + P+ P AT F H
Sbjct: 171 ASLYTRAPRPPRGGKTYLLTAAPQCPYPDASLAAALATGLFDH 213
>01_01_0219 + 1863478-1864041,1864459-1865109
Length = 404
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 176 VLVALGGTARRPVLGGSGSESKMLVWPPPGGRSTLLDRRAPSLRPT 39
+L +L ++ RP++ S S VWPPP ST +P PT
Sbjct: 46 MLHSLVPSSSRPIMQPSPSPETPCVWPPPLPSSTPTPAPSPPSTPT 91
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = -1
Query: 161 GGTARRPVLGGSGSESKMLVWPPPGGRSTLLDR 63
GG A R VLGG G L PP GGR L R
Sbjct: 140 GGGAPRRVLGGGGGGGA-LARPPGGGRGGALGR 171
>01_07_0046 -
40714701-40714763,40715266-40715343,40716398-40716462,
40717075-40717201,40717279-40717319,40717621-40717690,
40718070-40718191,40719047-40719107,40719182-40719292,
40719387-40719461,40719815-40719842,40719929-40719978,
40720228-40720290,40720385-40720426,40720562-40720631,
40720663-40720713,40721857-40722041,40722374-40722775
Length = 567
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/49 (42%), Positives = 25/49 (51%)
Frame = -1
Query: 164 LGGTARRPVLGGSGSESKMLVWPPPGGRSTLLDRRAPSLRPTLNGVEVI 18
LG TAR P S + + +V PPP RST R A + RPT V I
Sbjct: 124 LGRTARSP----SPALGRNIVEPPPTVRSTSAGRPAVASRPTTTVVPPI 168
>10_08_0271 - 16382655-16384451
Length = 598
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Frame = +1
Query: 61 RLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVP----------PSATSTFSHGQGDEPKA 210
R +S V R GGG T+ P PP G A P PS +T H + A
Sbjct: 64 RKASPVDRGGGGGGTSFSGHSPSPPDAGGSAKPESPHDSGVKAPSELTTVEHTKQPSEPA 123
Query: 211 TNGTSVATNGQ 243
+ GT G+
Sbjct: 124 STGTESDDGGK 134
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +1
Query: 85 PPGGGHTNIFDSEPEPPRTGRRAV-PPSATSTFSHGQGDEPKATNGTSVATNGQSTP 252
PP G N F + P PP R + P+ +T S G P + TNG P
Sbjct: 653 PPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVP 709
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 124 PEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNG 240
P PP A PP S + +G G P G +VA G
Sbjct: 167 PPPPYGSGYAPPPPYGSGYGYGYGPAPDYGGGMAVANGG 205
>01_02_0108 - 11200964-11201338
Length = 124
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +1
Query: 19 MTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST 177
M ST NVGL+ A +S ++RP G +F P R G AV S +T
Sbjct: 1 MASTLTNVGLSTPAAAASSLVRPVAGAGRVVF---PRVGRGGFAAVRASGPAT 50
>03_01_0280 + 2152000-2153510,2153633-2153732
Length = 536
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 492 CIEAKFS*GTLPVALLKFCNCDQRCSKQCVFPILPFEMINVVLSASDARIGCI 650
C K LP+ L F +RC+ Q VF L F+M ++ S D GC+
Sbjct: 150 CSSDKVENALLPL-LSHFAGTGERCNLQDVFMRLTFDMSTMLASGEDP--GCL 199
>08_01_0252 + 2060214-2060587,2060710-2061166
Length = 276
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 425 VWFGLPQARGEPAGGDPDA 369
V++GL Q RG+ +GGD DA
Sbjct: 85 VFYGLAQCRGDVSGGDCDA 103
>05_04_0002 + 17031662-17032264
Length = 200
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 139 TGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 252
+G+R P S+TST + G GD+ + +S +++ ++P
Sbjct: 54 SGKRGPPTSSTSTMASG-GDDDEEEGASSSSSSADTSP 90
>03_03_0142 + 14800317-14801240
Length = 307
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 124 PEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSV 228
P P R G A P+A +T G E +T GTS+
Sbjct: 198 PPPARKGLSACNPAAATTTPGGAAAESASTAGTSL 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,535,860
Number of Sequences: 37544
Number of extensions: 398767
Number of successful extensions: 1426
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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