Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1364
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)                       29   4.1  
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)             29   4.1  
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)               28   7.2  
SB_42298| Best HMM Match : Polyoma_agno (HMM E-Value=8.2)              28   9.5  
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)                   28   9.5  

>SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 24/77 (31%), Positives = 35/77 (45%)
 Frame = +1

Query: 22  TSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDE 201
           T+ P+N     G  + S     P  G T  ++  P  P  G   VPP+  +  S+G    
Sbjct: 103 TTVPYN-----GPTVPSNGTTVPSNGTTVPYNG-PTVPSNGA-TVPPNGATVPSNGT--- 152

Query: 202 PKATNGTSVATNGQSTP 252
              +NGT+V TNG + P
Sbjct: 153 TVPSNGTTVPTNGTTVP 169


>SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)
          Length = 188

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 157 PPSATSTFSHGQGDEPKATNGTSVATNGQSTP 252
           PPS++S      G+    TNG S   NG++TP
Sbjct: 103 PPSSSSLPELSSGNTHGETNGMSAKVNGRNTP 134


>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
          Length = 822

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 157 PPSATSTFSHGQGDEPKATNGTSVATNGQSTP 252
           PPS++S      G+    TNG S   NG++TP
Sbjct: 775 PPSSSSLPELSSGNTHGETNGMSAKVNGRNTP 806


>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
          Length = 754

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 76  VLRPPGGGHTNIFDSEPEPPRTGRRAVPPSAT 171
           V   P       F  E EPP+  R+  PPS T
Sbjct: 318 VTTSPSNARRRFFGFETEPPQASRQCSPPSRT 349


>SB_42298| Best HMM Match : Polyoma_agno (HMM E-Value=8.2)
          Length = 327

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 594 AKSETHIVLSIFDHNCRILKGQ 529
           A+SETHI     DH  R+L+G+
Sbjct: 18  ARSETHIRCLSLDHKSRVLRGE 39


>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
          Length = 1197

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -2

Query: 595 GKIGNTHCFEHL*SQLQNFKRATGSVPQENLASIHICDIM*VK*KSKI*LYRLTANGCGS 416
           G  G+T C + +    Q  K+ TG   Q+ + ++++  I  +  KSK  +Y    N    
Sbjct: 56  GPRGDTICIDAIKKLKQQIKQ-TGEHKQKIIMAVNLRGIRILDEKSKALVYEHAINKVSF 114

Query: 415 VYHKPEE 395
           + H PE+
Sbjct: 115 ITHDPED 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,273,363
Number of Sequences: 59808
Number of extensions: 399316
Number of successful extensions: 1152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)