Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1364
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    33   0.22 
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +1

Query: 1   DK*KNKMTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTF 180
           +K KN   +  FN   N G + +     P     T++ ++   PP+TGR+ + P+  + F
Sbjct: 287 NKYKNNYKAPEFNNDFNGGNKFNQ--FPPRNAQSTDLSENRAAPPQTGRKTLMPTPQAPF 344

Query: 181 SHGQGDEPKATNGTSVATN 237
              Q      TNG S   N
Sbjct: 345 ---QNAPAPFTNGPSDDVN 360


>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
           protein T21C9.2 protein.
          Length = 1058

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 616 TTLIISKGKIGNTHCFEHL*SQLQNFKRATGSVPQENLASI 494
           T+L +   ++    CF HL SQL+      G +  E+ AS+
Sbjct: 420 TSLDVLSKELNGVTCFRHLASQLRELYTVIGRMMNEDFASL 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,952,146
Number of Sequences: 27780
Number of extensions: 312201
Number of successful extensions: 956
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)