Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1364
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02970.1 68416.m00292 phosphate-responsive 1 family protein s...    30   1.5  
At1g03260.1 68414.m00304 expressed protein                             30   1.5  
At5g19070.1 68418.m02267 expressed protein                             28   7.9  
At2g42850.1 68415.m05306 cytochrome P450 family protein similar ...    28   7.9  
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    28   7.9  

>At3g02970.1 68416.m00292 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 332

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 16  KMTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTF-SHG 189
           K  +TP+N  +      SS  +  P    T +F S   P  TGR  V P     F SHG
Sbjct: 251 KSETTPYNDDVKKNHESSSMYIVDPATKCTRVFGSGAFPGFTGRIRVDPITGGAFNSHG 309


>At1g03260.1 68414.m00304 expressed protein
          Length = 274

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 579 VFPILPFEMINVVLSASDARIG 644
           V PILPF M+N +LS +  R+G
Sbjct: 142 VVPILPFNMLNYLLSVTPVRLG 163


>At5g19070.1 68418.m02267 expressed protein
          Length = 280

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 585 PILPFEMINVVLSASDARIG 644
           P+LPF M+N +LS +  R+G
Sbjct: 142 PLLPFSMLNYLLSVTPIRLG 161


>At2g42850.1 68415.m05306 cytochrome P450 family protein similar to
           taxane 13-alpha-hydroxylase (GI:17148242) {Taxus
           cuspidata}
          Length = 485

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 374 QGPPRRVLLGLVVNRTTPVGCESVQSNLRFSFNSHYVTNMYRG 502
           QG   RVL G+V N  + +G ES+   L  +   H+ T  +RG
Sbjct: 136 QGEKHRVLRGIVANSLSYIGLESLIPKLCDTVKFHHETE-WRG 177


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 29  HHSTLASMTELVYQAGCS-APPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATD 190
           HH   +S + LVY +  S APP+   L+SS    S   P  VP  + +   +A +
Sbjct: 223 HHQRFSSPSFLVYPSNSSFAPPLQGVLSSS--TESEAVPQQVPAAEGEATTTAPE 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,973,545
Number of Sequences: 28952
Number of extensions: 288306
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)