Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1363
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    28   1.9  
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr...    27   3.3  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   5.8  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   5.8  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   5.8  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +2

Query: 206 SAEYKLEGDVVKVKNVLSSTASRSI*KGRPSSPTTPI--KPQS*QSLLSLEKY 358
           SA  K+  D +  KN  S  + R + K  PSSP+TPI   P+  + +LSL++Y
Sbjct: 518 SALAKIGHDALNRKNHASLPSRRIVYKP-PSSPSTPISMNPRP-KGILSLQQY 568


>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 792 IRENCEKYGHPVIGWLWSLQSGSTNK 715
           +RE  EK G  V GW++ L +G   K
Sbjct: 202 VREAMEKRGLQVHGWIYDLSNGQIKK 227


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 534 SKEIDSSKLVHTDFSEEACKFTSSSVITEHGKH 632
           +KEI+SSK   TD   E   FT  +  + +  H
Sbjct: 96  AKEIESSKNQETDAKSEQAPFTEDASSSNYAHH 128


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 382  LATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTVSIISSRNTPKR*TLRNL 561
            L+T + ++ I+YN  +  K +   + VW  S     E  A   +I+  +   K   L NL
Sbjct: 1386 LSTTFYSFLISYNDSFIKKHEEKVLTVWFESLGALDEDHAAQFTILLLQKNLKNPILLNL 1445

Query: 562  CIPI 573
             I +
Sbjct: 1446 PISV 1449


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 296 SSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSL 448
           SS   P  P      ++      ++   S+RL + T+P+L   N   RKSL
Sbjct: 147 SSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSL 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,623
Number of Sequences: 5004
Number of extensions: 62217
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)