Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1363
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  36   0.055
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)                    29   4.7  
SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)              29   4.7  
SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3)                 29   6.3  
SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.3  
SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)                    28   8.3  
SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)                    28   8.3  

>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 92  GTCPELKPVNNFNLTAYQGIWYEI-SKFPNES--EKNGKCSSAEYKLEGD 232
           G C  +  V   N+T+Y G WY++ S F  E   E+N  C +A+Y L  D
Sbjct: 233 GPCQGIDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKD 282


>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1013

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 346 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTVSIISS 525
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+        K  ++ SS
Sbjct: 504 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSKQSPSGAFPKVGTVHSS 563


>SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)
          Length = 264

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 346 FGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTVSIISS 525
           FGE  ++GS+ + A    ++A A    Y D+K   Q   W++S+        K  ++ SS
Sbjct: 202 FGERDKEGSMWLTAFVVKSFAQARKYIYIDEKALDQSIFWMVSKQSPSGAFPKVGTVHSS 261


>SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3)
          Length = 1347

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = +2

Query: 398 ITTPSLTTANTMTRKSLIKCSSGSSLETRSLKATLKLCR*FHQGTLQ 538
           I   S T  N  T  S   C SG  +   SLK    LC      TL+
Sbjct: 266 IERTSKTDTNISTSSSFTSCGSGQDISLVSLKGISDLCERIENETLK 312


>SB_4417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +2

Query: 182 SEKNGKCSSAEYKLEGDVVKVKNVLSSTASRSI*KGRPSSPTTPIKPQS*QSLLSLEKYH 361
           S+ +GK  S   +LE  +V++K   ++ A++ +            K  S QSL + +   
Sbjct: 529 SDSDGKAKSRIKELEAKIVELKKKQANAANKRLKDALQKQREAADKRMSQQSLQNKQSEG 588

Query: 362 AMDQFKSW 385
            + + KSW
Sbjct: 589 MLRRMKSW 596


>SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)
          Length = 591

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 236 PRHLPVCIQLKSICRSSQIRWEISRFHTRCLGKLSS*SCSPVSARGRCLRE*LQQSP 66
           PR+   C++L + C SSQ + ++   H + L +L+       S+R       LQ  P
Sbjct: 320 PRYHIACLKLWTSCYSSQFKQDLLAKHAKLLLRLAEKDSLDTSSRPAFCTASLQHQP 376


>SB_4060| Best HMM Match : zf-CCHC (HMM E-Value=3.6)
          Length = 395

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
 Frame = +1

Query: 289 TAKLTDDANKAAKLTVTFK--FGEISRDGSV-QVLATDYNNYAIAYNCKYDDKKKSHQVF 459
           T ++T+  +      + FK    EIS+ G+V +V+ATD  +  I  + K +  +  HQ  
Sbjct: 129 TVQVTEAGSSNGMERLGFKNCMDEISKSGNVVKVVATD-RHVGIRSDLKKNHPECQHQFD 187

Query: 460 VWILSRN--KKLEGDAK 504
           VW ++++  KKL   AK
Sbjct: 188 VWHMAKSVTKKLTEAAK 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,982,754
Number of Sequences: 59808
Number of extensions: 453099
Number of successful extensions: 1257
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)