Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1363
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58070.1 68418.m07267 lipocalin, putative similar to temperat...    40   0.002
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative...    30   2.2  
At5g14890.1 68418.m01746 NHL repeat-containing protein contains ...    29   2.9  
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu...    29   2.9  
At5g64816.2 68418.m08154 expressed protein                             29   5.1  
At5g64816.1 68418.m08153 expressed protein                             29   5.1  
At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative s...    28   6.8  
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    28   6.8  
At1g76750.1 68414.m08932 hypothetical protein                          28   6.8  
At1g59560.1 68414.m06698 expressed protein contains similarity t...    28   6.8  
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si...    28   9.0  

>At5g58070.1 68418.m07267 lipocalin, putative similar to temperature
           stress-induced lipocalin [Triticum aestivum] GI:18650668
          Length = 186

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 104 ELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVLSSTASRS 277
           E++ V   N+  Y G WYEI+ FP+  + KNG  + A Y L  D  + V N   S   R 
Sbjct: 6   EMEVVKGLNVERYMGRWYEIASFPSRFQPKNGVDTRATYTLNPDGTIHVLNETWSNGKRG 65

Query: 278 I*KG 289
             +G
Sbjct: 66  FIEG 69


>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 345

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 161 ISKFPNESEKNGKCSSAEYKLEG--DVVKVKNV-LSSTASRSI*KGRPSSPTTPI 316
           +S FP ES+ + K ++ E+KL G  + V VKN+ LS      I  G+P   T  +
Sbjct: 14  VSGFPKESDFDFKTTTVEFKLPGGSNSVLVKNLYLSCDPYMRIRMGKPDPSTAAL 68


>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 754

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 383 WRLTIITTPSLTTANTMTRKSLIKCSSGSSLET 481
           W L   TT + TT + ++ +S++K  SG ++ET
Sbjct: 50  WSLQTSTTTTTTTKSGVSSRSMVKYESGYNMET 82



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 750 WLWSLQSGSTNKTKTYVNLNTVVTIQFDS 664
           WLWSLQ+ +T  T T   +++   ++++S
Sbjct: 48  WLWSLQTSTTTTTTTKSGVSSRSMVKYES 76


>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
           putative (AVDE1) similar to EST gb|N37612
          Length = 462

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 116 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNV 253
           V NFN++ + G WY I+   N +     C   E+  EGD   V N+
Sbjct: 204 VQNFNISDFNGKWY-ITSGLNPTFDAFDCQLHEFHTEGDNKLVGNI 248


>At5g64816.2 68418.m08154 expressed protein
          Length = 130

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 472 RGSRRTLDETFSCHRICSCKR 410
           RG  ++ DE F C R+C+ KR
Sbjct: 38  RGREKSSDEIFVCERVCTSKR 58


>At5g64816.1 68418.m08153 expressed protein
          Length = 130

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 472 RGSRRTLDETFSCHRICSCKR 410
           RG  ++ DE F C R+C+ KR
Sbjct: 38  RGREKSSDEIFVCERVCTSKR 58


>At5g60040.1 68418.m07529 DNA-directed RNA polymerase, putative
           similar to SP|P04051 DNA-directed RNA polymerase III
           largest subunit (EC 2.7.7.6) {Saccharomyces cerevisiae};
           contains InterPro accession IPR000722: RNA polymerase,
           alpha subunit
          Length = 1328

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 277 YIEGTAKLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIA 414
           Y   +  ++    KA      F  G  ++DG   +L  DYN++A A
Sbjct: 609 YFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAA 654


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = +1

Query: 235 GEGQERAIIDGVKKYIEG-------TAKLTDDANKAAKLTVTFKFGEISRDG-SVQVLAT 390
           G+G ++ +I G K Y +G       T  +  D   A  +      G I     +++VLA 
Sbjct: 307 GDGPDKTVISGSKSYKDGITTYKTATVAIVGDHFIAKNIAFENTAGAIKHQAVAIRVLAD 366

Query: 391 DYNNYAIAYNCKYD 432
           +    +I YNCK+D
Sbjct: 367 E----SIFYNCKFD 376


>At1g76750.1 68414.m08932 hypothetical protein
          Length = 158

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 395 IITTPSLTTANTMTRKSLIKCSSGSSLETRSLKATLKL 508
           I+T   +  ++T+T + L+K S G+S  T SL   LKL
Sbjct: 13  IVTLMLMVASSTVTARPLMKPSMGTSSPTTSLVYRLKL 50


>At1g59560.1 68414.m06698 expressed protein contains similarity to
           apoptosis inhibitors
          Length = 338

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 183 LRRTANALQLNTNWKVTW*RSRTCYHRRRQEV--YRRDG 293
           L+RTA    L  NW+ +W R+ T      +EV  Y  DG
Sbjct: 78  LKRTAEQQVLRRNWRFSWVRNSTLMQPMTKEVPWYLDDG 116


>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 363

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 768 GHPVIGWLWSLQSGSTNKT 712
           G P +GW WSL SG+   T
Sbjct: 243 GFPYVGWTWSLGSGNDAAT 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,419,035
Number of Sequences: 28952
Number of extensions: 319047
Number of successful extensions: 827
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)