Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1362
(846 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q01581 Cluster: Hydroxymethylglutaryl-CoA synthase, cyt... 115 1e-24
UniRef50_P54873 Cluster: Hydroxymethylglutaryl-CoA synthase; n=3... 101 2e-20
UniRef50_Q2UKZ2 Cluster: Hydroxymethylglutaryl-CoA synthase; n=5... 93 1e-17
UniRef50_P54839 Cluster: Hydroxymethylglutaryl-CoA synthase; n=1... 91 4e-17
UniRef50_UPI00006CFE45 Cluster: hydroxymethylglutaryl-CoA syntha... 83 9e-15
UniRef50_A0DKI0 Cluster: Chromosome undetermined scaffold_54, wh... 78 2e-13
UniRef50_A6RGN8 Cluster: Hydroxymethylglutaryl-CoA synthase; n=3... 75 2e-12
UniRef50_P54871 Cluster: Hydroxymethylglutaryl-CoA synthase; n=2... 72 2e-11
UniRef50_A2FZ93 Cluster: Hydroxymethylglutaryl-CoA synthase fami... 70 8e-11
UniRef50_Q5KJX0 Cluster: Hydroxymethylglutaryl-CoA synthase, put... 59 2e-07
UniRef50_Q7LZE7 Cluster: Hydroxymethylglutaryl-CoA synthase; n=2... 58 2e-07
UniRef50_Q8SR61 Cluster: 3-HYDROXY-3-METHYLGLUTARYL-CoA SYNTHASE... 52 2e-05
UniRef50_Q7QQE4 Cluster: GLP_91_15470_16939; n=1; Giardia lambli... 48 2e-04
UniRef50_UPI00005A343B Cluster: PREDICTED: similar to Hydroxymet... 48 3e-04
UniRef50_Q9FD56 Cluster: HMG-CoA synthase; n=46; Streptococcacea... 40 0.059
UniRef50_Q1D4I1 Cluster: Hydroxymethylglutaryl-CoA synthase; n=2... 38 0.32
UniRef50_Q22BX5 Cluster: Ubiquitin carrier protein; n=5; Tetrahy... 37 0.55
UniRef50_A0RW92 Cluster: 3-hydroxy-3-methylglutaryl CoA synthase... 37 0.55
UniRef50_A5EUV4 Cluster: Hydroxymethylglutaryl-CoA synthase; n=1... 37 0.73
UniRef50_Q1VYR6 Cluster: Putative uncharacterized protein; n=1; ... 35 3.0
UniRef50_Q022J1 Cluster: Putative secreted protein precursor; n=... 35 3.0
UniRef50_Q4N8D1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_Q1ESZ0 Cluster: Omega9 fatty acid desaturase; n=2; Mort... 34 3.9
UniRef50_Q55FW0 Cluster: Putative uncharacterized protein; n=1; ... 34 5.2
UniRef50_Q8IIR4 Cluster: Putative uncharacterized protein; n=3; ... 33 6.8
UniRef50_Q23BS5 Cluster: Putative uncharacterized protein; n=1; ... 33 6.8
UniRef50_A6R985 Cluster: Predicted protein; n=1; Ajellomyces cap... 33 6.8
UniRef50_A6DJR1 Cluster: Putative uncharacterized protein; n=1; ... 33 9.0
UniRef50_A4Y3Q3 Cluster: Putative uncharacterized protein; n=1; ... 33 9.0
UniRef50_Q9BXX2 Cluster: Ankyrin repeat domain-containing protei... 33 9.0
UniRef50_A2R707 Cluster: EC:3.4.99.-; n=17; Pezizomycotina|Rep: ... 33 9.0
UniRef50_Q5V1G0 Cluster: Hydroxymethylglutaryl-CoA synthase; n=5... 33 9.0
>UniRef50_Q01581 Cluster: Hydroxymethylglutaryl-CoA synthase,
cytoplasmic; n=102; Eukaryota|Rep:
Hydroxymethylglutaryl-CoA synthase, cytoplasmic - Homo
sapiens (Human)
Length = 520
Score = 115 bits (277), Expect = 1e-24
Identities = 57/101 (56%), Positives = 72/101 (71%), Gaps = 5/101 (4%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMR---KTDPNFKG--LL 167
+M HAYDFYKPD+ SE+P VDGKLSIQCYL+ALD CY+++ KK+ + + N K L
Sbjct: 197 HMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDKDFTLN 256
Query: 168 SLDGMLFHSPYCKLVQKSLARVCFNDFLNYLLRNVRNNFLG 290
M+FHSPYCKLVQKSLAR+ NDFLN R+ + + G
Sbjct: 257 DFGFMIFHSPYCKLVQKSLARMLLNDFLNDQNRDKNSIYSG 297
Score = 99 bits (238), Expect = 7e-20
Identities = 45/102 (44%), Positives = 68/102 (66%)
Frame = +1
Query: 499 EEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIM 678
+ + +FSYGSGLA+T+YS+ V D + GS L+K+ +SL + + LD R V P F++ M
Sbjct: 368 KRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENM 427
Query: 679 DVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTYDRK 804
+R +H Y P GS+D LF GT+YL ++D++ RRTY R+
Sbjct: 428 KLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARR 469
Score = 92.3 bits (219), Expect = 1e-17
Identities = 47/101 (46%), Positives = 61/101 (60%)
Frame = +2
Query: 215 KIISKSVLQ*FSELPAEEREKQFPGLSEFSNHKLEDTYFDREVEKAFMTYSLSLFEEKTK 394
K +++ +L F ++ + GL F + KLEDTYFDR+VEKAFM S LF +KTK
Sbjct: 273 KSLARMLLNDFLNDQNRDKNSIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFSQKTK 332
Query: 395 PSLHIARNVGNMYTPSLYGGLVSYLISKSPDQLIGKKFLCF 517
SL ++ GNMYT S+YG L S L SP QL GK+ F
Sbjct: 333 ASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVF 373
>UniRef50_P54873 Cluster: Hydroxymethylglutaryl-CoA synthase; n=31;
Streptophytina|Rep: Hydroxymethylglutaryl-CoA synthase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 461
Score = 101 bits (243), Expect = 2e-20
Identities = 46/83 (55%), Positives = 57/83 (68%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLDGM 182
+M H YDFYKP+L+SE+P VDGKLS CYL ALD+CY K K + + D +
Sbjct: 185 HMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKIEGKEFSINDADYI 244
Query: 183 LFHSPYCKLVQKSLARVCFNDFL 251
+FHSPY KLVQKS AR+ +NDFL
Sbjct: 245 VFHSPYNKLVQKSFARLLYNDFL 267
Score = 58.8 bits (136), Expect = 2e-07
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Frame = +1
Query: 499 EEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIM 678
+ V +FSYGSG +TM+S+ + +D + I+S+ + L R P KF + M
Sbjct: 350 KRVVMFSYGSGSTATMFSLRL-NDNKPPFSISN-IASVMDVGGKLKARHEYAPEKFVETM 407
Query: 679 DVRTKNYHSAPYEPT--GSLDVLFPGTYYL*KIDDQRRRTYDRK 804
+ Y + + T G +D+L PGTYYL ++D RR Y +K
Sbjct: 408 KLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRRFYGKK 451
Score = 53.2 bits (122), Expect = 8e-06
Identities = 31/102 (30%), Positives = 54/102 (52%)
Frame = +2
Query: 212 SKIISKSVLQ*FSELPAEEREKQFPGLSEFSNHKLEDTYFDREVEKAFMTYSLSLFEEKT 391
++++ L+ S + +EK P +S+ L+++Y R++EK + ++ K
Sbjct: 259 ARLLYNDFLRNASSIDEAAKEKFTP----YSSLTLDESYQSRDLEKVSQQIAKPFYDAKV 314
Query: 392 KPSLHIARNVGNMYTPSLYGGLVSYLISKSPDQLIGKKFLCF 517
+P+ I + VGNMYT SLY S LI K + L GK+ + F
Sbjct: 315 QPTTLIPKEVGNMYTASLYAAFAS-LIHKKHNDLAGKRVVMF 355
>UniRef50_Q2UKZ2 Cluster: Hydroxymethylglutaryl-CoA synthase; n=5;
Eukaryota|Rep: Hydroxymethylglutaryl-CoA synthase -
Aspergillus oryzae
Length = 460
Score = 92.7 bits (220), Expect = 1e-17
Identities = 47/96 (48%), Positives = 60/96 (62%), Gaps = 13/96 (13%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMR----KTDPNFKG--- 161
Y+TH YDFYKPDL+SE+P VDG+ S+QCY A+D CY ++ + + KT G
Sbjct: 188 YVTHTYDFYKPDLTSEYPVVDGQHSLQCYTEAVDACYKAYAAREKTLKEKTQNGTNGVAH 247
Query: 162 ------LLSLDGMLFHSPYCKLVQKSLARVCFNDFL 251
L D +LFHSP CKLVQKS R+ +NDFL
Sbjct: 248 DESKTPLDRFDYILFHSPTCKLVQKSYGRMLYNDFL 283
Score = 66.9 bits (156), Expect = 6e-10
Identities = 37/102 (36%), Positives = 61/102 (59%)
Frame = +1
Query: 499 EEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIM 678
+ + LFSYGSGLA++M+S + D+S + EKL LH L+ R + P + ++
Sbjct: 365 KRIGLFSYGSGLAASMFSAKIVGDVSYMA--EKL--DLHNR---LNARDVLAPQAYVEMC 417
Query: 679 DVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTYDRK 804
+R + + ++P+G+ + LFP TYYL ++DD RR Y+ K
Sbjct: 418 ALRKQAHLKKNFKPSGNTETLFPNTYYLTEVDDMFRRKYEVK 459
Score = 50.0 bits (114), Expect = 7e-05
Identities = 23/46 (50%), Positives = 29/46 (63%)
Frame = +2
Query: 332 DREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLYGGLVSYL 469
D+ VEK FM + F E+ KPSL +A GNMYT ++Y GL S L
Sbjct: 309 DKNVEKTFMGLTKKRFAERVKPSLDVATLCGNMYTATVYAGLASLL 354
>UniRef50_P54839 Cluster: Hydroxymethylglutaryl-CoA synthase; n=11;
Ascomycota|Rep: Hydroxymethylglutaryl-CoA synthase -
Saccharomyces cerevisiae (Baker's yeast)
Length = 491
Score = 90.6 bits (215), Expect = 4e-17
Identities = 45/90 (50%), Positives = 56/90 (62%), Gaps = 8/90 (8%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRK----TDPNFKGLLS 170
YM HAYDFYKPD +SE+PYVDG S+ CY+ ALD Y +SKK +DP L+
Sbjct: 226 YMEHAYDFYKPDFTSEYPYVDGHFSLTCYVKALDQVYKSYSKKAISKGLVSDPAGSDALN 285
Query: 171 L----DGMLFHSPYCKLVQKSLARVCFNDF 248
+ D +FH P CKLV KS R+ +NDF
Sbjct: 286 VLKYFDYNVFHVPTCKLVTKSYGRLLYNDF 315
Score = 62.5 bits (145), Expect = 1e-08
Identities = 38/108 (35%), Positives = 59/108 (54%)
Frame = +1
Query: 481 SRSVNWEEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPS 660
S + + V LFSYGSGLA+++YS + D+ + +I L T L KR + P
Sbjct: 390 SDDLQGKRVGLFSYGSGLAASLYSCKIVGDV------QHIIKELDITNKLA-KRITETPK 442
Query: 661 KFSDIMDVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTYDRK 804
+ +++R + ++P GS++ L G YYL IDD+ RR+YD K
Sbjct: 443 DYEAAIELRENAHLKKNFKPQGSIEHLQSGVYYLTNIDDKFRRSYDVK 490
Score = 48.0 bits (109), Expect = 3e-04
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 281 FPGL-SEFSNHKLEDTYFDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLYGGL 457
FP + +E + +++ D+ +EK F+ + +E+ SL + N GNMYT S+Y
Sbjct: 322 FPEVDAELATRDYDESLTDKNIEKTFVNVAKPFHKERVAQSLIVPTNTGNMYTASVYAAF 381
Query: 458 VSYLISKSPDQLIGKK 505
S L D L GK+
Sbjct: 382 ASLLNYVGSDDLQGKR 397
>UniRef50_UPI00006CFE45 Cluster: hydroxymethylglutaryl-CoA synthase
family protein; n=1; Tetrahymena thermophila SB210|Rep:
hydroxymethylglutaryl-CoA synthase family protein -
Tetrahymena thermophila SB210
Length = 566
Score = 83.0 bits (196), Expect = 9e-15
Identities = 39/91 (42%), Positives = 56/91 (61%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLDGM 182
++ HAYDFYKPD SEFP VDG LSI YL A+DN + ++K + L +D
Sbjct: 186 FIDHAYDFYKPDPRSEFPTVDGHLSINTYLGAIDNNFKTLNQKYAVANLRPFSLQDVDYG 245
Query: 183 LFHSPYCKLVQKSLARVCFNDFLNYLLRNVR 275
FH+P+ K+VQK+ R+ +ND L+ + V+
Sbjct: 246 CFHAPFAKMVQKAFVRLFYNDVLSGYNKEVK 276
Score = 49.6 bits (113), Expect = 1e-04
Identities = 31/101 (30%), Positives = 49/101 (48%)
Frame = +1
Query: 499 EEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIM 678
+ + +FSYGSGLAS+M+ + V D S I S+ L +R + ++ IM
Sbjct: 347 KRILMFSYGSGLASSMFFLRVGEDYS-------FIKSVINLKERLSQRIKIPIQEYDQIM 399
Query: 679 DVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTYDR 801
R K + P P + + L G ++L +D RR Y+R
Sbjct: 400 AEREKAFGFLPSNPKVNFERLGEGVFFLSSVDKMWRRQYER 440
Score = 47.6 bits (108), Expect = 4e-04
Identities = 27/64 (42%), Positives = 35/64 (54%)
Frame = +2
Query: 326 YFDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLYGGLVSYLISKSPDQLIGKK 505
Y +EV + S + +K KPSL + N+GN+YT SLY GL S LIS L K+
Sbjct: 290 YNSKEVTEKLSKLSSQTWNQKVKPSLLMGENLGNIYTGSLYAGLCS-LISDDNIDLRNKR 348
Query: 506 FLCF 517
L F
Sbjct: 349 ILMF 352
>UniRef50_A0DKI0 Cluster: Chromosome undetermined scaffold_54, whole
genome shotgun sequence; n=11; Eukaryota|Rep: Chromosome
undetermined scaffold_54, whole genome shotgun sequence
- Paramecium tetraurelia
Length = 2056
Score = 78.2 bits (184), Expect = 2e-13
Identities = 39/81 (48%), Positives = 49/81 (60%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLDGM 182
YM YDFYKP+ SE+P VDG+LSIQ YL ++DNC + KK D +F
Sbjct: 183 YMKDNYDFYKPNFHSEYPTVDGQLSIQSYLQSIDNCIQSYYKKNNNLDADF--------Y 234
Query: 183 LFHSPYCKLVQKSLARVCFND 245
FHSP+ K+VQKS RV N+
Sbjct: 235 CFHSPFHKMVQKSFLRVKLNE 255
Score = 52.0 bits (119), Expect = 2e-05
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Frame = +1
Query: 499 EEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIM 678
+ + +FSYGSG A++++ + C+ +++ K S + E L +R + ++ IM
Sbjct: 324 KRIMMFSYGSGCAASLFFLR-CNK---STRMMKQNSKVQER---LQQRIRISCIEYDHIM 376
Query: 679 DVRTKNY--HSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTY 795
R NY HS Y+P +D L+PGT+YL IDD+ RR Y
Sbjct: 377 QQREINYNKHSQQYQPK-QVD-LYPGTFYLKSIDDKYRREY 415
Score = 37.9 bits (84), Expect = 0.32
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 386 KTKPSLHIARNVGNMYTPSLYGGLVSYLISKSPDQLIGKKFLCF 517
K PS ++R +GN+YT +LY GL S + ++ D LI K+ + F
Sbjct: 288 KAFPSCLLSRELGNIYTGALYAGLASLI--ETQDDLINKRIMMF 329
>UniRef50_A6RGN8 Cluster: Hydroxymethylglutaryl-CoA synthase; n=3;
Pezizomycotina|Rep: Hydroxymethylglutaryl-CoA synthase -
Ajellomyces capsulatus NAm1
Length = 475
Score = 74.9 bits (176), Expect = 2e-12
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 26/109 (23%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNC---YNLFSKKMR------------ 137
++TH YDFYKPDL+SE+PYVDG SI+CY A+D+C YN K ++
Sbjct: 188 HITHEYDFYKPDLTSEYPYVDGHYSIKCYTRAVDSCYKAYNAKEKFLQARALQNGSANTT 247
Query: 138 -----------KTDPNFKGLLSLDGMLFHSPYCKLVQKSLARVCFNDFL 251
T L D ++FH+P CKLV KS AR+ +ND+L
Sbjct: 248 AVNGSTASNGESTSNTNTPLDRFDHVIFHAPTCKLVAKSYARLLYNDYL 296
Score = 67.3 bits (157), Expect = 5e-10
Identities = 37/102 (36%), Positives = 61/102 (59%)
Frame = +1
Query: 499 EEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIM 678
+ + +FSYGSGLAS+++S+ V D+S +EK+ L + +A R++V P + ++
Sbjct: 380 KRIGVFSYGSGLASSIFSVKVVGDIS--GIVEKI--DLKKRLAA---RRTVAPEVYDEMC 432
Query: 679 DVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTYDRK 804
+R + + P G++D + PGTYYL K+DD RR Y K
Sbjct: 433 VLRENAHLKKNFTPAGNIDTITPGTYYLVKVDDMFRREYQIK 474
Score = 55.6 bits (128), Expect = 1e-06
Identities = 31/79 (39%), Positives = 44/79 (55%)
Frame = +2
Query: 245 FSELPAEEREKQFPGLSEFSNHKLEDTYFDREVEKAFMTYSLSLFEEKTKPSLHIARNVG 424
F+E+PAE R+ + E + DR +EKAFM + F E+ +PS+ +A G
Sbjct: 304 FAEVPAELRDLDY-----------EASLSDRAIEKAFMAMTKKRFNERVQPSIEVATMCG 352
Query: 425 NMYTPSLYGGLVSYLISKS 481
NMY S+YGGL S L + S
Sbjct: 353 NMYCASVYGGLASLLTNAS 371
>UniRef50_P54871 Cluster: Hydroxymethylglutaryl-CoA synthase; n=2;
Caenorhabditis|Rep: Hydroxymethylglutaryl-CoA synthase -
Caenorhabditis elegans
Length = 462
Score = 71.7 bits (168), Expect = 2e-11
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Frame = +3
Query: 3 YMTHAYDFYKP--DLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLD 176
+M + +DF+KP + SE+P VDG LS+ YL A+ Y F K+ + GL S D
Sbjct: 193 HMKNTWDFFKPITPIPSEYPVVDGSLSLSSYLEAVRMTYTYFISKVNRHTTGIDGLNSFD 252
Query: 177 GMLFHSPYCKLVQKSLARVCFND 245
G+ HSP+ K+VQK LA + + D
Sbjct: 253 GVFLHSPFTKMVQKGLAVMNYTD 275
Score = 48.8 bits (111), Expect = 2e-04
Identities = 31/83 (37%), Positives = 46/83 (55%)
Frame = +2
Query: 269 REKQFPGLSEFSNHKLEDTYFDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLY 448
R KQ G +HKL++ DR + S +++EKT P L R +GNMYTPSL+
Sbjct: 279 RHKQLNGNGV--DHKLDEN--DRAGLAKMIELSAQVWKEKTDPYLVFNRRIGNMYTPSLF 334
Query: 449 GGLVSYLISKSPDQLIGKKFLCF 517
L++YL + D + G+K + F
Sbjct: 335 AQLLAYL--AADDCVTGEKSILF 355
Score = 46.4 bits (105), Expect = 0.001
Identities = 30/99 (30%), Positives = 46/99 (46%)
Frame = +1
Query: 499 EEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIM 678
+ + F+YGSGLAS ++ V S L+K+ + LD R P +F++ +
Sbjct: 351 KSILFFAYGSGLASAIFPGRVRQT----SNLDKIRQVAIRAIKRLDDRIQFTPEEFTETL 406
Query: 679 DVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTY 795
R S + S LFP TY+L +D RR+Y
Sbjct: 407 QKREVFLRSKEIPKSPSETSLFPNTYFLDNMDKLYRRSY 445
>UniRef50_A2FZ93 Cluster: Hydroxymethylglutaryl-CoA synthase family
protein; n=2; Trichomonas vaginalis G3|Rep:
Hydroxymethylglutaryl-CoA synthase family protein -
Trichomonas vaginalis G3
Length = 433
Score = 69.7 bits (163), Expect = 8e-11
Identities = 42/108 (38%), Positives = 62/108 (57%)
Frame = +1
Query: 481 SRSVNWEEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPS 660
+R + + + +FSYGSG AS+MY +NV D+ K K +L E +A R + S
Sbjct: 332 NRDLTGKRLMMFSYGSGAASSMYVLNVVGDI----KFMKDALNLEERLA---NRVQRKVS 384
Query: 661 KFSDIMDVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTYDRK 804
+ + + + Y +APYEP+ SLD++ G +YL KIDD RR Y RK
Sbjct: 385 DYDHDIKLADQLYRTAPYEPSCSLDLIESGAWYLEKIDDNWRRIYKRK 432
Score = 58.0 bits (134), Expect = 3e-07
Identities = 29/81 (35%), Positives = 45/81 (55%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLDGM 182
Y TH++DF+KP+ ++ P VDG LS+ Y L+NCY F + T L D +
Sbjct: 194 YFTHSFDFWKPNPANPHPKVDGPLSLTLYYECLENCYMQFRTRHPGTT-----LDKFDYV 248
Query: 183 LFHSPYCKLVQKSLARVCFND 245
+FH+P+ ++K R+ F D
Sbjct: 249 VFHTPFQNHIKKCTGRLNFLD 269
>UniRef50_Q5KJX0 Cluster: Hydroxymethylglutaryl-CoA synthase,
putative; n=2; Filobasidiella neoformans|Rep:
Hydroxymethylglutaryl-CoA synthase, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 498
Score = 58.8 bits (136), Expect = 2e-07
Identities = 33/102 (32%), Positives = 59/102 (57%)
Frame = +1
Query: 499 EEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIM 678
+ + ++++GSG A++ +++ V ST EK+ L E +A +D R E + D +
Sbjct: 404 KRIGMYAFGSGCAASFFALRVAG--STKEIAEKM--QLKERLASMDVRPCQE---YVDAL 456
Query: 679 DVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTYDRK 804
+R +N+++ Y P GSLD ++P YYL +D+ RR Y +K
Sbjct: 457 KLREENHNAVKYTPQGSLDNIWPDAYYLEGVDELYRRKYLKK 498
Score = 58.0 bits (134), Expect = 3e-07
Identities = 26/57 (45%), Positives = 36/57 (63%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSL 173
Y+ + +DFYKPDL++E+P VDG +I YL ALDN Y+ + K K+ LSL
Sbjct: 192 YIANTWDFYKPDLTAEYPTVDGPWTIAAYLGALDNAYSTYVDKAEKSRARAAKKLSL 248
Score = 47.6 bits (108), Expect = 4e-04
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 323 TYFDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLYGGLVSYLISKSPDQL-IG 499
TY D+ VEKAF+ + ++ P GNMYT SLYG L S +I+ SP+ + +G
Sbjct: 345 TYTDKTVEKAFIGVAAEHYKSAVVPGSDCVARCGNMYTASLYGALAS-VIASSPEGIEVG 403
Query: 500 KK 505
K+
Sbjct: 404 KR 405
Score = 38.3 bits (85), Expect = 0.24
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3
Query: 156 KGLLSLDGMLFHSPYCKLVQKSLARVCFNDFL 251
+G+ + D + HSPY KLVQK AR+ +ND+L
Sbjct: 291 QGIAAFDYVCLHSPYGKLVQKGHARLFYNDYL 322
>UniRef50_Q7LZE7 Cluster: Hydroxymethylglutaryl-CoA synthase; n=2;
Eukaryota|Rep: Hydroxymethylglutaryl-CoA synthase -
Gallus gallus (Chicken)
Length = 42
Score = 58.4 bits (135), Expect = 2e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYL 92
+M HAYDFYKPDLS E+P VDG LSIQCYL
Sbjct: 13 HMEHAYDFYKPDLSXEYPVVDGXLSIQCYL 42
>UniRef50_Q8SR61 Cluster: 3-HYDROXY-3-METHYLGLUTARYL-CoA SYNTHASE 2;
n=1; Encephalitozoon cuniculi|Rep:
3-HYDROXY-3-METHYLGLUTARYL-CoA SYNTHASE 2 -
Encephalitozoon cuniculi
Length = 382
Score = 51.6 bits (118), Expect = 2e-05
Identities = 28/72 (38%), Positives = 38/72 (52%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLDGM 182
Y T+ +DF KP FP V GK SI+ Y A + CY F +KM + S D +
Sbjct: 185 YFTNQFDFMKPRELHPFPVVKGKESIENYRTAFEICYGRFREKMAEES-------SFDYI 237
Query: 183 LFHSPYCKLVQK 218
+ HSPY +L +K
Sbjct: 238 VLHSPYTRLPEK 249
>UniRef50_Q7QQE4 Cluster: GLP_91_15470_16939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_91_15470_16939 - Giardia lamblia
ATCC 50803
Length = 489
Score = 48.4 bits (110), Expect = 2e-04
Identities = 27/72 (37%), Positives = 37/72 (51%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLDGM 182
Y + DFYKP ++S P V G SI+CYL A N S + ++ + L D
Sbjct: 205 YWENTTDFYKPHIASPVPVVHGATSIECYLRA--NLLAAMSNEQQR-----RLFLDADFA 257
Query: 183 LFHSPYCKLVQK 218
FH+PYC L +K
Sbjct: 258 CFHTPYCTLPKK 269
>UniRef50_UPI00005A343B Cluster: PREDICTED: similar to
Hydroxymethylglutaryl-CoA synthase, mitochondrial
precursor (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl
coenzyme A synthase); n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to Hydroxymethylglutaryl-CoA
synthase, mitochondrial precursor (HMG-CoA synthase)
(3-hydroxy-3-methylglutaryl coenzyme A synthase) - Canis
familiaris
Length = 417
Score = 48.0 bits (109), Expect = 3e-04
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = +3
Query: 171 LDGMLFHSPYCKLVQKSLARVCFNDFLN 254
L M+FH+P+CK+VQKSLAR+ FNDFL+
Sbjct: 214 LQFMIFHTPFCKMVQKSLARLMFNDFLS 241
Score = 48.0 bits (109), Expect = 3e-04
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2
Query: 329 FDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLYGGLVSYLISKSP 484
++++++KA SL F +KTK SL+++ + NMYT SLYG L S L P
Sbjct: 247 YNKDMDKALQKASLDTFNKKTKASLYLSMHYRNMYTSSLYGCLASLLSRPGP 298
>UniRef50_Q9FD56 Cluster: HMG-CoA synthase; n=46;
Streptococcaceae|Rep: HMG-CoA synthase - Streptococcus
pneumoniae
Length = 398
Score = 40.3 bits (90), Expect = 0.059
Identities = 24/71 (33%), Positives = 39/71 (54%)
Frame = +3
Query: 21 DFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLDGMLFHSPY 200
DF++P+ S+ PYV+G S Q YL++L + + K+ + T +F + FH PY
Sbjct: 192 DFWRPNYSTT-PYVNGVYSTQQYLDSLKTTWLEYQKRYQLTLDDFA------AVCFHLPY 244
Query: 201 CKLVQKSLARV 233
KL K L ++
Sbjct: 245 PKLALKGLKKI 255
>UniRef50_Q1D4I1 Cluster: Hydroxymethylglutaryl-CoA synthase; n=2;
Cystobacterineae|Rep: Hydroxymethylglutaryl-CoA synthase
- Myxococcus xanthus (strain DK 1622)
Length = 418
Score = 37.9 bits (84), Expect = 0.32
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 18 YDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTD-PNFKGLL---SLDGML 185
YDF++P + VDG SI CYL AL Y + +K + L L +
Sbjct: 190 YDFWRP-VGRREALVDGHYSITCYLEALSGAYRGWREKALAAGLVRWSDALPGEQLARIA 248
Query: 186 FHSPYCKLVQKS 221
+H P+CK+ +K+
Sbjct: 249 YHVPFCKMARKA 260
>UniRef50_Q22BX5 Cluster: Ubiquitin carrier protein; n=5;
Tetrahymena thermophila SB210|Rep: Ubiquitin carrier
protein - Tetrahymena thermophila SB210
Length = 549
Score = 37.1 bits (82), Expect = 0.55
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 87 YLNALDNCYNLFSKKMRKTDP-NFKGLLSLDGMLFHSPYCKLVQKSLARVCFNDFLNY 257
Y LD+ YN ++K + K DP FK L+ +L S K+ K LA+V N++ Y
Sbjct: 468 YEKNLDDVYNHYAKTLYKEDPEGFKTLIKKQSILQDSQKLKIDFKQLAKVPINEYNGY 525
>UniRef50_A0RW92 Cluster: 3-hydroxy-3-methylglutaryl CoA synthase;
n=2; Thermoprotei|Rep: 3-hydroxy-3-methylglutaryl CoA
synthase - Cenarchaeum symbiosum
Length = 464
Score = 37.1 bits (82), Expect = 0.55
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 18 YDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKG-----LLSLDGM 182
YDFY+P E P V G+ S YL + N ++ KK + G L +D +
Sbjct: 194 YDFYRP-FGKETPIVHGQYSNLLYLIQVRNALEIYKKKAAASGIISVGEGRSVLDYIDHL 252
Query: 183 LFHSPYCKLVQKSLA 227
H PY K+ +K+LA
Sbjct: 253 NMHLPYAKMGKKALA 267
>UniRef50_A5EUV4 Cluster: Hydroxymethylglutaryl-CoA synthase; n=1;
Dichelobacter nodosus VCS1703A|Rep:
Hydroxymethylglutaryl-CoA synthase - Dichelobacter
nodosus (strain VCS1703A)
Length = 384
Score = 36.7 bits (81), Expect = 0.73
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = +3
Query: 3 YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLDGM 182
Y DF++P+ P VDGK S YL A N +N + + F
Sbjct: 179 YTEEVMDFWRPN-HRHTPLVDGKFSTTVYLRAAQNAFNDYQNQGGLAFSQFSQYC----- 232
Query: 183 LFHSPYCKLVQKSLARVCFNDFLNY 257
+H P+ K+ K+ R+C + ++Y
Sbjct: 233 -YHLPFTKMGLKTHQRLCRFNHIDY 256
>UniRef50_Q1VYR6 Cluster: Putative uncharacterized protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: Putative
uncharacterized protein - Psychroflexus torquis ATCC
700755
Length = 294
Score = 34.7 bits (76), Expect = 3.0
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 529 GLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVE 654
G+A+ +S+N D +T + K SLH V L K+QS+E
Sbjct: 29 GIATNYFSLNTLSDANTPFEFSKTADSLHRVVDSLKKQQSLE 70
>UniRef50_Q022J1 Cluster: Putative secreted protein precursor; n=1;
Solibacter usitatus Ellin6076|Rep: Putative secreted
protein precursor - Solibacter usitatus (strain
Ellin6076)
Length = 663
Score = 34.7 bits (76), Expect = 3.0
Identities = 24/76 (31%), Positives = 33/76 (43%)
Frame = +1
Query: 517 SYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIMDVRTKN 696
S+G G +T S N CHD++ S L + LLD V P + + D
Sbjct: 340 SHGEGTQTTS-STNQCHDITIYSALGLAAGACSGNGILLDISDPVNPKRIDAVSDPNYAF 398
Query: 697 YHSAPYEPTGSLDVLF 744
+HSA + G VLF
Sbjct: 399 WHSANFSNDGK-KVLF 413
>UniRef50_Q4N8D1 Cluster: Putative uncharacterized protein; n=1;
Theileria parva|Rep: Putative uncharacterized protein -
Theileria parva
Length = 549
Score = 34.3 bits (75), Expect = 3.9
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +2
Query: 365 SLSLFEEKTKPSLHIARNVGNMYTPSLYGGLVSYLISKSPDQLIGKKFLCFHTVQD 532
++S+F EKT S+ + +N +MY +GG+ YL S + + K+ C HTV D
Sbjct: 5 NISIFTEKTGDSVTLVQNDTSMYKVYDHGGIFLYLFSDGV-KCVEIKY-CDHTVHD 58
>UniRef50_Q1ESZ0 Cluster: Omega9 fatty acid desaturase; n=2;
Mortierella alpina|Rep: Omega9 fatty acid desaturase -
Mortierella alpina (Mortierella renispora)
Length = 512
Score = 34.3 bits (75), Expect = 3.9
Identities = 24/83 (28%), Positives = 38/83 (45%)
Frame = +1
Query: 472 KQISRSVNWEEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSV 651
K+ +RS + + S+ + S ++S+ S + C D +L ISS +L D V
Sbjct: 9 KRTTRSSSGKSTSMKNPSSAISSSSSSNSDCSDSEAIGRLS--ISSAASVTSLEDSSSPV 66
Query: 652 EPSKFSDIMDVRTKNYHSAPYEP 720
+I + TKN S YEP
Sbjct: 67 IAKHIKEIPKITTKNDFSVLYEP 89
>UniRef50_Q55FW0 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1127
Score = 33.9 bits (74), Expect = 5.2
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +1
Query: 490 VNWEEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFS 669
++W++ +Y L M IN +G+ L++ H T A++ K ++ P+KF
Sbjct: 786 LHWDQPVRNAYHHLLLYKMVRINRSKLYESGATLQEFSKLTHNTPAIITKSSALSPTKFI 845
Query: 670 DIMDVRTKNYHSAPYEPTGSL 732
D D + S+ SL
Sbjct: 846 DSKDDNHSYFSSSRINNNSSL 866
>UniRef50_Q8IIR4 Cluster: Putative uncharacterized protein; n=3;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 463
Score = 33.5 bits (73), Expect = 6.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 87 YLNALDNCYNLFSKKMRKTDPNFKGLLSLDGMLFHSPYCKLVQK 218
Y+ LD+C N FS +K + G+LS + M + CK + K
Sbjct: 228 YIKCLDDCKNSFSFNNKKYKSLYFGILSCNNMEMYHDACKYINK 271
>UniRef50_Q23BS5 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1701
Score = 33.5 bits (73), Expect = 6.8
Identities = 30/149 (20%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Frame = -2
Query: 668 ENLLGSTLCLLSSKATVSCNEEISFSNF-DPVLMS*HTFMEYIVDANPEPYENKETSSQL 492
E L+ S L +++ VS E + F + + E A +K S ++
Sbjct: 569 EKLVQSDLFMMNKLHIVSIQSETELNEFFQSQITNQIQIQEIFFRAQFSREADKYVSQEI 628
Query: 491 TDLEICLSNKTQDLRIMMVCTYYQHYVQYEEKVLFSPQINLSYMS*MLFQLPY----QSK 324
++ + S+ Q L+ M+ Y+Q++ Q ++ +++Y+ ++P+ K
Sbjct: 629 SETALNSSSDHQKLKGMITLAYFQYFEQMALQMFLKKGFSVNYLQVKRNEIPFFQKEDLK 688
Query: 323 YLLIYDY*TRRAQEIVSHVPQQVIQKIIE 237
LL D + I ++ ++I KII+
Sbjct: 689 GLLSIDQQFLLEENIRKYINSKIITKIID 717
>UniRef50_A6R985 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 221
Score = 33.5 bits (73), Expect = 6.8
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 593 KSLSPHYMKQLLYWIKGRVWNPVS 664
KS + HY +Q + WI+GR+WN ++
Sbjct: 99 KSATRHYYRQQIRWIRGRLWNALT 122
>UniRef50_A6DJR1 Cluster: Putative uncharacterized protein; n=1;
Lentisphaera araneosa HTCC2155|Rep: Putative
uncharacterized protein - Lentisphaera araneosa HTCC2155
Length = 1023
Score = 33.1 bits (72), Expect = 9.0
Identities = 21/79 (26%), Positives = 37/79 (46%)
Frame = +2
Query: 257 PAEEREKQFPGLSEFSNHKLEDTYFDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYT 436
P + + Q P ++ N ++ T F +E A + Y LS+ + + S R + N+YT
Sbjct: 511 PYDYKSDQLPDRAQL-NPRIPHTAFRVLLELADVPYLLSVAKTRGPKSEMALRVLKNIYT 569
Query: 437 PSLYGGLVSYLISKSPDQL 493
P + G+ SP+ L
Sbjct: 570 PEVVAGITKLCNEASPEDL 588
>UniRef50_A4Y3Q3 Cluster: Putative uncharacterized protein; n=1;
Shewanella putrefaciens CN-32|Rep: Putative
uncharacterized protein - Shewanella putrefaciens CN-32
Length = 145
Score = 33.1 bits (72), Expect = 9.0
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +1
Query: 559 VCHDMSTGSKLEKLI-SSLHETVALLDKRQSV--EPSKFSDIMDVRTKNYHSAPYEPTGS 729
V + + SK EK I + L E +AL+D++ S P+ + R K+YH + TG+
Sbjct: 11 VLFGIKSTSKDEKTIHNKLKEFLALIDRKTSTAKNPTMLESFLPFRIKHYHWNLNKETGT 70
Query: 730 LDVLFP 747
LFP
Sbjct: 71 FIKLFP 76
>UniRef50_Q9BXX2 Cluster: Ankyrin repeat domain-containing protein
30B; n=9; Homo/Pan/Gorilla group|Rep: Ankyrin repeat
domain-containing protein 30B - Homo sapiens (Human)
Length = 1011
Score = 33.1 bits (72), Expect = 9.0
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +2
Query: 212 SKIISKSVLQ*FSELPAEEREKQFPGLSEFSNHKLEDTYF----DREVEKAFMTYSLSLF 379
+KIISKS Q ++ LP +K + NHK+ED F RE ++ + S SLF
Sbjct: 289 TKIISKSAAQNYTCLPDATYQKDIKTI----NHKIEDQMFPSESKREEDEEYSWDSGSLF 344
Query: 380 EEKTKPSLHIARNV 421
E K + I ++
Sbjct: 345 ESSAKTQVCIPESM 358
>UniRef50_A2R707 Cluster: EC:3.4.99.-; n=17; Pezizomycotina|Rep:
EC:3.4.99.- - Aspergillus niger
Length = 1167
Score = 33.1 bits (72), Expect = 9.0
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 514 FSYGSGLASTMYSINVCH---DMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIMDV 684
+SY + LA YS++ D+S G +K+ S L E V + V+P +F+ I +
Sbjct: 664 YSYDAELAGLDYSLSASLFGLDISVGGYNDKM-SVLLEKVLTSMRDLVVKPDRFNIIKER 722
Query: 685 RTKNYHSAPYE 717
T+NY +A Y+
Sbjct: 723 MTRNYKNAEYQ 733
>UniRef50_Q5V1G0 Cluster: Hydroxymethylglutaryl-CoA synthase; n=5;
Halobacteriaceae|Rep: Hydroxymethylglutaryl-CoA synthase
- Haloarcula marismortui (Halobacterium marismortui)
Length = 445
Score = 33.1 bits (72), Expect = 9.0
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +3
Query: 21 DFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFKGLLSLDGMLFHSPY 200
DF KP+ +FP VDGK S+ YL + F++ P + + FH+P+
Sbjct: 195 DFLKPN--QQFPSVDGKRSVNVYLARMREALEDFAEVAGDIHPG-----DYEMIPFHTPF 247
Query: 201 CKLVQKSLA 227
+V+K+ A
Sbjct: 248 PGMVRKAAA 256
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 802,570,963
Number of Sequences: 1657284
Number of extensions: 15589589
Number of successful extensions: 36630
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 35280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36610
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74193458591
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -