Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1362
         (846 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    31   0.015
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    25   0.57 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.7  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   3.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   7.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   7.0  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 0.015
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 308 HKLEDTYFDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLYGGLVSYLI 472
           H+L + YF  ++E    +YSL L  +K + S+     V      S+ G + +YL+
Sbjct: 325 HELRNNYFHMDLENNVQSYSLQLLHQKVQFSVLGFFVVDYTLLYSIVGAVTTYLV 379


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +1

Query: 454 SCVLFDKQISRSVNWEEVSLFSYGSGLASTMYSINVCH 567
           S +LFD  + R+  ++   + S+ SG+  T++++  C+
Sbjct: 145 SYLLFDYFVQRNQEYKYYQILSHLSGIFFTVFNVAQCY 182


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = +3

Query: 396 LLFILHVMLVICTHHHY 446
           +LF +H++L++C ++ Y
Sbjct: 246 ILFTVHLLLLVCIYYFY 262


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 652 EPSKFSDIMDVRTKNYHSAPYEPTGSLDVLFP 747
           E SK+ D ++V T ++H       G    LFP
Sbjct: 695 EISKYLDFINVMTYDFHGQWERTVGHNSPLFP 726


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = -2

Query: 434 CTYYQHYVQYEEKVLFSPQINLSYMS*MLFQLPYQSKYLLIYDY*TRRAQEIVSHVPQQV 255
           C  YQH  +Y+E+ L        ++   L  +P     L  Y +      ++  +VP+  
Sbjct: 156 CMEYQHLHRYKEEALQGDGRMRQHVMHNLSSVPQPQPVLPTYKW-----MQVKRNVPKPT 210

Query: 254 IQKI 243
           + KI
Sbjct: 211 VPKI 214


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = -2

Query: 434 CTYYQHYVQYEEKVLFSPQINLSYMS*MLFQLPYQSKYLLIYDY*TRRAQEIVSHVPQQV 255
           C  YQH  +Y+E+ L        ++   L  +P     L  Y +      ++  +VP+  
Sbjct: 156 CMEYQHLHRYKEEALQGDGRMRQHVMHNLSSVPQPQPVLPTYKW-----MQVKRNVPKPT 210

Query: 254 IQKI 243
           + KI
Sbjct: 211 VPKI 214


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,780
Number of Sequences: 336
Number of extensions: 4558
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)