Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1362
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    89   7e-19
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    30   0.47 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    30   0.47 
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    27   2.5  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   2.5  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   5.8  

>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 89.0 bits (211), Expect = 7e-19
 Identities = 43/85 (50%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
 Frame = +3

Query: 3   YMTHAYDFYKPDLSSEFPYVDGKLSIQCYLNALDNCYNLFSKKMRKTDPNFK----GLLS 170
           YM HAYDFYKPDL+SE+PYVDG  S++CY+ ALD  Y  ++  +R    N K    GL  
Sbjct: 186 YMQHAYDFYKPDLTSEYPYVDGHFSLECYVKALDGAYANYN--VRDVAKNGKSQGLGLDR 243

Query: 171 LDGMLFHSPYCKLVQKSLARVCFND 245
            D  +FH+P CK VQK+ AR+ + D
Sbjct: 244 FDYCIFHAPTCKQVQKAYARLLYTD 268



 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 35/102 (34%), Positives = 58/102 (56%)
 Frame = +1

Query: 499 EEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDKRQSVEPSKFSDIM 678
           + V  +SYGSGLA++ +S  V  D+S  +K   L++ L       D R  + P+++ + +
Sbjct: 352 KRVGAYSYGSGLAASFFSFVVKGDVSEIAKKTNLVNDL-------DNRHCLTPTQYEEAI 404

Query: 679 DVRTKNYHSAPYEPTGSLDVLFPGTYYL*KIDDQRRRTYDRK 804
           ++R + +    + P GS++ L  GTYYL  IDD  RR+Y  K
Sbjct: 405 ELRHQAHLKKNFTPKGSIERLRSGTYYLTGIDDMFRRSYSVK 446



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +2

Query: 245 FSELPAEEREKQFPGLSEF-SNHKLEDTYFDREVEKAFMTYSLSLFEEKTKPSLHIARNV 421
           +++  AE    +  G+ E  S    + +  D+ +EK  M  +   F ++  PS++   N 
Sbjct: 266 YTDSAAEPSNPELEGVRELLSTLDAKKSLTDKALEKGLMAITKERFNKRVSPSVYAPTNC 325

Query: 422 GNMYTPSLYGGLVSYLISKSPDQLIGKK 505
           GNMYT S++  L + L     D+L GK+
Sbjct: 326 GNMYTASIFSCLTALLSRVPADELKGKR 353


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +2

Query: 326 YFDREVEKAFMTYSLSLFEEKTKPSLHIARNVGNMYTPSLYGGLVSYLISKSPDQLIGKK 505
           ++D ++ +       S  ++K   + +I   V +M+   LYGGL +Y  SK  +  +   
Sbjct: 233 FWDEKIARFIAHLKESTPDKKPYSARYIGSMVADMHRTILYGGLFAYPCSKGNNGKLRLL 292

Query: 506 FLCF 517
           + CF
Sbjct: 293 YECF 296


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +1

Query: 469 DKQISRSVNWEEVSLFSYGSGLASTMYSINVCHDMSTGSKLEKLISSLHETVALLDK 639
           DK+ ++SVN E        S  + T++S ++  DM+T +   K   S H T  LL K
Sbjct: 531 DKRENQSVNSESSKYSPRSSNHSPTLHSKDLHRDMATVNNYAKSPPSFHATQDLLRK 587


>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -2

Query: 536 ANPEPYENKETSSQLTDLEICLSNK 462
           A P+P ENK T  QLTDL + LS K
Sbjct: 265 AKPKP-ENKLTYQQLTDLYVELSKK 288


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
 Frame = +1

Query: 499 EEVSLFSY-GSGLASTMYSINVCHDMSTG--SKLEK---LISSLHETVALLDK-RQSVEP 657
           E ++ F Y  + L     SIN   D      S LEK   +ISSL ETVA+L+K R+S++ 
Sbjct: 584 EVMNAFQYKDNDLRRFHESINKLQDREKELTSNLEKKNLVISSLRETVAMLEKERESIKK 643

Query: 658 SKFSDIMDVRTKN 696
               +  D+   N
Sbjct: 644 YLSGNAKDLDNTN 656


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 804 FPIISTPSLIIYFSKVIC---SWEQDI*RTSRLIW 709
           FPIISTPSL+I  + ++    S +Q    T  L W
Sbjct: 353 FPIISTPSLVISSNSILYPKDSLDQIYDSTKTLTW 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,548,742
Number of Sequences: 5004
Number of extensions: 74831
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)